Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 2.9e-174 615.1 315 100.0
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 8.5e-142 507.3 278 88.8
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.4e-136 489.2 273 85.3
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 2.6e-135 485.7 275 85.8
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.0e-134 483.8 269 86.6
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-134 482.6 269 86.2
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.9e-134 482.3 264 87.5
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.5e-134 481.1 267 85.8
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.1e-133 480.3 278 84.2
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.5e-133 479.9 274 83.9
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.9e-133 479.6 263 87.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.9e-133 479.6 274 83.9
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 3.2e-133 478.8 267 85.8
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 7.2e-133 477.6 273 83.9
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 7.2e-133 477.6 264 86.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 4.7e-132 474.9 269 85.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.1e-132 474.6 278 83.5
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 8.0e-132 474.2 274 82.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.8e-131 473.0 300 79.0
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 3.0e-131 472.2 271 83.0
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 3.0e-131 472.2 276 83.7
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.0e-131 471.9 267 85.4
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 6.7e-131 471.1 274 82.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.0e-130 469.5 279 81.7
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 2.0e-130 469.5 272 82.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 2.0e-130 469.5 270 85.2
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 2.6e-130 469.2 290 80.0
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.6e-130 469.2 255 87.8
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 2.6e-130 469.2 262 85.1
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.3e-130 468.8 272 83.1
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 4.4e-130 468.4 312 76.6
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 4.4e-130 468.4 265 84.9
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.7e-130 468.0 288 79.9
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.7e-130 468.0 290 79.7
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 7.5e-130 467.6 311 75.2
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 7.5e-130 467.6 269 84.0
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.7e-129 466.5 287 80.1
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 2.8e-129 465.7 308 75.3
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 3.7e-129 465.3 254 87.4
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 4.8e-129 464.9 267 83.9
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 4.8e-129 464.9 313 76.0
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.8e-129 464.9 255 86.3
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 6.3e-129 464.5 303 76.9
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 6.3e-129 464.5 268 81.7
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.1e-128 463.8 267 83.9
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.4e-128 463.4 315 75.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.4e-128 463.4 271 81.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.4e-128 463.4 271 81.2
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.4e-128 463.4 279 83.2
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.8e-128 463.0 267 83.9
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.8e-128 463.0 312 75.3
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.8e-128 463.0 276 81.9
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 4.1e-128 461.8 274 83.2
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 4.1e-128 461.8 254 86.2
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 9.1e-128 460.7 315 74.9
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.6e-127 459.9 315 75.2
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.0e-127 459.5 272 81.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.7e-127 459.1 272 81.2
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 3.5e-127 458.8 270 79.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 7.7e-127 457.6 316 72.5
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.0e-126 457.2 267 82.4
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.0e-126 457.2 288 79.2
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.3e-126 456.8 315 74.6
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.3e-126 456.8 308 76.0
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.9e-126 455.7 315 74.6
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 2.9e-126 455.7 243 88.9
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.8e-126 455.3 278 81.3
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 6.5e-126 454.5 270 80.0
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 6.5e-126 454.5 312 72.8
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.1e-125 453.8 262 80.2
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.1e-125 453.8 251 86.9
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 5.5e-125 451.4 276 80.1
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.7e-124 448.4 267 79.4
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 6.1e-124 448.0 289 77.5
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.4e-123 446.8 276 77.2
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.4e-123 446.8 272 79.8
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.4e-123 446.8 289 75.1
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.8e-123 446.4 316 72.5
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 4.0e-123 445.3 273 79.5
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 4.0e-123 445.3 291 74.6
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 5.2e-123 444.9 273 79.5
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 8.8e-123 444.1 274 76.6
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.5e-122 443.4 263 78.7
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.0e-122 443.0 272 79.4
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 4.4e-122 441.8 272 77.6
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 5.7e-122 441.4 275 77.1
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 9.8e-122 440.7 271 77.9
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 4.8e-121 438.3 243 85.2
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.4e-120 436.0 243 84.0
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.4e-120 436.0 243 84.0
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 3.1e-120 435.6 306 69.0
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.1e-120 435.3 285 74.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 7.0e-120 434.5 315 72.4
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.5e-114 416.8 252 78.6
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.5e-114 414.5 317 70.0
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.6e-108 396.7 287 70.4
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 3.4e-106 389.0 296 65.9
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 4.9e-105 385.2 219 85.4
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.4e-104 383.6 281 65.1
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 7.0e-104 381.3 259 68.7
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 3.0e-102 375.9 304 63.2
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.6e-101 371.7 279 65.6
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.9e-99 364.4 265 73.2
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.3e-97 360.5 275 72.0
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.9e-96 356.7 192 89.1
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.8e-92 342.8 190 85.8
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.6e-92 342.4 192 83.9
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 6.2e-92 341.7 190 85.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 6.2e-92 341.7 298 58.7
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.4e-91 340.5 192 83.3
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 2.3e-91 339.7 250 73.2
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.4e-88 329.7 263 61.6
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.0e-86 324.3 268 60.8
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.7e-84 315.5 257 65.8
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.7e-84 315.5 173 86.7
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 6.2e-84 315.1 187 82.9
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.1e-80 304.3 243 59.7
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 5.6e-77 292.0 210 71.9
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 5.6e-69 265.4 256 53.9
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 9.3e-64 248.1 188 67.6
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 8.1e-60 235.0 259 52.5
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 7.6e-58 228.4 171 71.9
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 9.4e-40 168.3 138 62.3
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 2.2e-36 157.1 85 84.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.4e-35 153.7 276 37.3
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.7e-22 109.0 319 28.8
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 2.0e-21 107.5 65 80.0
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 3.7e-20 103.2 70 67.1
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.4e-19 101.3 303 33.3
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 4.7e-15 86.3 104 54.8
MCO15G348 Micromonas commoda HOM05D006171 ORTHO05D268671 1.4e-11 74.7 322 32.6
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.4e-11 74.7 97 53.6


User provided reference genes

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