Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.2e-134 482.3 237 100.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 4.4e-82 308.5 208 70.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 7.0e-80 301.2 219 66.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 7.0e-80 301.2 208 69.2
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.5e-79 298.9 227 61.7
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.0e-78 297.4 233 64.8
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.5e-77 293.5 237 61.6
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.9e-77 293.1 208 69.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 4.2e-77 292.0 222 59.9
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.2e-76 290.4 208 65.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.1e-76 289.7 240 60.0
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.6e-76 288.9 230 62.6
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.4e-75 287.0 238 60.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.4e-75 287.0 229 63.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 3.9e-75 285.4 208 63.5
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 8.8e-75 284.3 221 59.3
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 8.8e-75 284.3 213 63.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.1e-74 283.9 232 61.6
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.0e-74 283.1 233 60.9
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.6e-74 282.7 221 58.8
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.6e-74 282.7 224 61.6
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.3e-74 282.3 208 65.9
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 7.4e-74 281.2 220 58.6
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.2e-73 279.6 228 61.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.8e-73 279.3 207 62.3
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.7e-73 278.9 222 61.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.7e-73 278.9 234 61.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 5.3e-72 275.0 229 56.8
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.2e-71 273.9 203 65.5
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.2e-71 273.9 209 61.2
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.6e-71 273.5 213 62.9
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.6e-71 273.5 231 58.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.6e-71 273.5 209 61.2
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.2e-70 269.6 215 64.2
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.2e-70 269.6 231 59.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.9e-70 269.2 235 56.6
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.0e-70 268.5 181 68.0
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 6.5e-70 268.1 228 57.9
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 6.5e-70 268.1 210 61.9
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 8.5e-70 267.7 210 60.0
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.1e-69 267.3 236 55.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.5e-69 266.9 228 58.3
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.9e-69 266.5 260 54.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 7.2e-69 264.6 225 56.9
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.6e-68 263.5 237 57.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.1e-68 263.1 231 55.8
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.1e-68 263.1 208 62.5
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.7e-68 262.7 235 57.0
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.6e-68 262.3 218 58.3
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.7e-68 261.9 233 57.9
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.7e-68 261.9 216 56.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 6.1e-68 261.5 236 55.5
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.0e-67 260.8 212 58.0
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.4e-67 260.4 205 59.5
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.4e-67 260.4 238 59.2
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 3.0e-67 259.2 228 56.1
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 6.8e-67 258.1 234 54.3
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.8e-67 257.7 239 56.5
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 8.8e-67 257.7 226 56.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.3e-65 253.8 235 54.0
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-65 253.8 230 54.8
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.7e-65 252.3 235 53.2
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 4.8e-65 251.9 200 59.5
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 6.3e-65 251.5 235 51.9
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-64 250.8 235 53.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.1e-64 250.8 204 58.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.4e-64 249.6 218 56.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 4.1e-64 248.8 231 54.5
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 7.0e-64 248.1 213 55.4
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-63 247.3 195 57.9
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.2e-63 247.3 235 53.2
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.0e-63 246.5 212 55.2
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.7e-63 246.1 236 53.8
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.5e-63 245.7 197 57.4
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.5e-63 245.7 197 57.4
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.5e-63 245.4 233 56.2
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.7e-63 244.6 225 55.6
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.0e-62 244.2 197 57.4
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.3e-62 243.8 235 51.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-62 243.4 230 54.8
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.2e-62 243.0 235 51.5
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.2e-62 243.0 203 58.6
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.9e-62 242.7 229 54.6
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.9e-62 242.7 231 53.2
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.8e-62 242.3 231 53.2
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.8e-62 242.3 231 53.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.1e-61 240.7 216 56.5
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-61 240.4 226 54.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.5e-61 239.6 234 51.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-61 239.6 197 56.3
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 3.2e-61 239.2 231 54.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 5.5e-61 238.4 197 55.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-60 237.3 235 50.2
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.2e-60 237.3 185 64.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.1e-60 235.0 230 50.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.3e-59 233.0 208 58.2
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 4.0e-59 232.3 218 53.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 5.2e-59 231.9 208 54.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 6.8e-59 231.5 164 64.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 8.8e-59 231.1 192 57.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.4e-58 229.2 236 51.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.7e-58 228.4 188 57.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 7.5e-58 228.0 191 57.1
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 3.7e-57 225.7 204 56.4
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.0e-55 219.9 189 52.9
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 3.5e-55 219.2 178 57.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 4.5e-55 218.8 230 49.6
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.3e-54 216.5 202 55.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 5.0e-54 215.3 169 61.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 5.0e-54 215.3 192 53.6
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.5e-53 213.0 164 64.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 5.5e-53 211.8 191 53.4
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 7.2e-53 211.5 222 51.4
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.1e-52 209.9 201 51.7
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.8e-51 206.8 234 50.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.3e-51 206.5 194 49.0
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-51 206.1 253 47.4
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 7.5e-50 201.4 130 65.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.2e-49 199.9 241 44.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.2e-44 184.1 235 45.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.6e-44 183.7 208 46.6
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.7e-44 182.2 254 45.7
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.8e-43 178.3 229 45.4
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.2e-42 177.6 140 54.3
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.6e-42 176.4 227 45.4
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 4.4e-42 175.6 217 43.8
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.2e-40 169.5 195 48.2
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 3.2e-40 169.5 108 69.4
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.3e-38 163.3 193 39.4
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.1e-32 144.4 136 56.6
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 6.6e-30 135.2 154 44.2
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.4e-24 117.5 81 58.0
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.6e-23 114.0 114 50.0
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.9e-21 107.1 71 60.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.2e-18 97.8 92 50.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.5e-18 97.4 83 50.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.0e-18 97.1 86 54.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.8e-17 92.8 63 58.7
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 4.6e-15 85.9 53 64.2
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 7.8e-15 85.1 65 53.8
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 8.7e-14 81.6 133 45.1
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.3e-13 79.7 104 51.0
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.8e-11 73.9 88 48.9
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.1e-11 73.2 52 65.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.4e-10 69.3 50 64.0
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 9.9e-10 68.2 51 62.7
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.7e-09 67.4 88 46.6
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.9e-09 66.6 33 72.7
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.9e-09 66.6 147 31.3
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.8e-09 66.2 219 26.5
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.6e-07 60.8 77 51.9
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.3e-06 57.8 38 60.5
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.0e-06 56.6 73 46.6


User provided reference genes

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