Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 1.2e-212 743.0 404 100.0
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 6.8e-160 567.8 323 83.6
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 5.7e-159 564.7 325 82.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 8.3e-158 560.8 323 83.3
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.1e-157 560.5 372 74.5
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 9.2e-157 557.4 325 81.2
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 2.7e-156 555.8 372 73.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.5e-156 555.4 366 75.1
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 5.9e-156 554.7 318 81.4
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 5.9e-156 554.7 404 70.5
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 1.3e-155 553.5 318 83.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.3e-155 553.5 402 70.6
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.7e-155 553.1 363 74.4
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.7e-155 553.1 372 73.7
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 2.3e-155 552.7 321 81.9
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 3.0e-155 552.4 318 81.8
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 3.9e-155 552.0 318 81.4
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 5.0e-155 551.6 319 81.5
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 5.0e-155 551.6 320 81.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 5.0e-155 551.6 318 82.4
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 6.6e-155 551.2 363 73.8
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 8.6e-155 550.8 321 81.3
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 8.6e-155 550.8 319 81.2
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.1e-154 550.4 318 81.4
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.5e-154 550.1 317 81.7
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.5e-154 549.3 319 80.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.5e-154 549.3 318 81.1
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 4.3e-154 548.5 321 80.4
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 5.6e-154 548.1 321 81.6
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.2e-153 547.0 319 80.6
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.1e-153 546.2 321 80.7
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.1e-153 546.2 319 80.6
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.8e-153 545.8 325 80.6
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 2.8e-153 545.8 320 80.0
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 6.2e-153 544.7 325 80.6
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 6.2e-153 544.7 321 80.1
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.4e-152 543.5 363 72.7
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.4e-152 543.5 319 79.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.4e-152 543.5 319 79.9
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-152 543.1 329 79.3
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 4.0e-152 542.0 329 79.3
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 5.2e-152 541.6 364 72.3
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 8.9e-152 540.8 328 78.7
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.5e-151 540.0 325 79.4
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.5e-151 540.0 377 70.8
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 2.6e-151 539.3 325 79.1
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.6e-151 539.3 321 79.4
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.6e-151 539.3 323 78.9
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 4.4e-151 538.5 325 79.7
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 4.4e-151 538.5 318 78.9
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 7.5e-151 537.7 319 79.0
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 6.4e-150 534.6 325 79.4
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 6.4e-150 534.6 363 71.9
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.4e-149 533.5 323 78.0
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 1.4e-149 533.5 325 78.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.4e-149 533.5 321 78.5
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.9e-149 533.1 325 78.5
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.4e-149 532.7 325 78.5
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 4.1e-149 531.9 325 77.2
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 5.4e-149 531.6 325 77.8
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 5.4e-149 531.6 321 78.8
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 9.2e-149 530.8 318 78.0
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 9.2e-149 530.8 321 77.9
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 9.2e-149 530.8 314 79.0
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 3.5e-148 528.9 325 76.6
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 3.5e-148 528.9 322 78.0
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 3.5e-148 528.9 322 78.0
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 3.5e-148 528.9 322 78.0
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.5e-146 523.5 344 75.3
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.9e-146 523.1 300 82.3
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 9.5e-146 520.8 360 69.7
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.2e-145 520.4 321 78.5
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.2e-145 520.4 321 76.0
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 6.8e-144 514.6 331 74.0
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 9.9e-143 510.8 314 76.8
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 9.9e-143 510.8 325 73.8
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 2.2e-142 509.6 318 74.2
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 2.9e-142 509.2 321 75.7
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 4.1e-141 505.4 323 75.5
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 9.2e-141 504.2 323 73.7
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 3.5e-140 502.3 358 69.6
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.7e-139 500.0 355 68.2
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 4.4e-135 485.3 276 81.9
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 5.8e-135 485.0 321 74.1
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 7.3e-130 468.0 274 80.3
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 9.6e-130 467.6 268 82.1
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 1.6e-129 466.8 276 78.6
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-126 457.2 267 80.1
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.9e-125 453.4 330 70.3
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 3.0e-123 446.0 259 81.9
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 6.4e-118 428.3 268 73.5
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 7.1e-117 424.9 318 64.5
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 7.9e-116 421.4 251 79.3
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.0e-115 421.0 321 60.7
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.5e-111 407.1 356 55.9
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.7e-110 403.7 321 59.2
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 6.7e-107 391.7 267 72.3
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-104 384.0 270 70.7
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 6.9e-104 381.7 290 66.9
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 6.9e-104 381.7 228 79.4
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.9e-99 365.9 226 77.9
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.0e-91 341.3 232 71.1
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-82 311.2 269 64.3
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.6e-76 290.8 273 58.6
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 3.1e-72 276.6 320 42.8
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 3.1e-72 276.6 320 42.8
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 5.9e-71 272.3 336 43.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.1e-69 268.1 181 71.3
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 3.6e-68 263.1 312 44.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 8.0e-68 261.9 155 79.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 7.5e-66 255.4 175 69.7
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 6.5e-62 242.3 166 71.7
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 6.1e-60 235.7 130 85.4
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 4.3e-37 159.8 91 81.3
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-34 151.0 399 31.8
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-33 148.3 100 68.0
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 3.9e-30 136.7 79 82.3
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.5e-29 134.0 85 68.2
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.5e-29 132.1 90 68.9
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-21 108.6 79 62.0
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-21 107.8 105 54.3
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.4e-16 91.7 75 62.7
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 9.2e-16 89.0 58 69.0
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 7.8e-15 85.9 54 74.1
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.5e-13 81.6 95 50.5
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 3.3e-13 80.5 47 80.9
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 4.3e-13 80.1 58 65.5
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.7e-12 76.6 54 63.0
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.7e-12 76.6 54 63.0
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 6.9e-11 72.8 75 53.3
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.5e-10 71.6 300 27.3
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 7.6e-10 69.3 47 72.3
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 1.3e-09 68.6 87 48.3
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 2.2e-09 67.8 278 27.0
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.8e-09 67.0 295 26.8
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 4.9e-09 66.6 46 71.7
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 6.4e-09 66.2 279 28.0
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 6.4e-09 66.2 130 36.9
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 8.4e-09 65.9 291 26.1
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 8.4e-09 65.9 278 28.4
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.9e-08 64.7 279 26.2
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-08 64.7 80 46.2
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 3.2e-08 63.9 279 26.2
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 3.2e-08 63.9 278 26.3
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 4.2e-08 63.5 283 26.1
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 5.4e-08 63.2 283 25.8
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 5.4e-08 63.2 283 26.1
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 5.4e-08 63.2 277 27.1
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 7.1e-08 62.8 279 25.8
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 7.1e-08 62.8 279 25.8
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.2e-07 62.0 282 24.5
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-07 62.0 42 71.4
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.2e-07 62.0 287 25.8
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.2e-07 62.0 280 25.0
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.6e-07 61.6 292 25.3
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.1e-07 61.2 285 24.6
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 2.1e-07 61.2 51 62.7
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 2.1e-07 61.2 283 23.7
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 3.5e-07 60.5 286 26.2
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 3.5e-07 60.5 296 25.7
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 7.8e-07 59.3 279 25.4
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 1.0e-06 58.9 279 24.4
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.3e-06 58.5 273 25.3
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 3.0e-06 57.4 281 24.9
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 3.0e-06 57.4 279 26.2
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 6.6e-06 56.2 283 25.1
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 6.6e-06 56.2 281 24.6
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 8.7e-06 55.8 284 25.4


User provided reference genes

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