Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 3.4e-253 877.9 452 100.0
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 2.1e-117 426.8 466 55.8
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.0e-116 424.5 471 55.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.5e-115 420.6 471 54.6
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 5.9e-112 408.7 478 52.7
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 9.4e-110 401.4 484 52.1
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.0e-108 396.4 490 50.4
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 5.2e-108 395.6 474 52.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 7.5e-107 391.7 486 52.1
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.2e-106 390.2 481 52.2
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 4.8e-106 389.0 475 50.5
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.4e-105 386.7 477 52.0
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 7.0e-105 385.2 479 49.9
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.0e-103 381.3 490 50.2
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 3.8e-103 379.4 467 51.2
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.5e-102 377.5 466 50.9
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 7.2e-102 375.2 478 50.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.1e-101 372.1 487 50.1
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.8e-100 368.6 457 49.9
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 3.7e-98 362.8 494 46.4
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 8.3e-98 361.7 492 47.6
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 9.1e-97 358.2 378 55.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.7e-96 356.7 483 46.4
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.3e-95 353.6 479 47.8
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 6.6e-95 352.1 475 48.4
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 3.3e-94 349.7 466 48.3
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 5.5e-94 349.0 483 49.9
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.6e-93 346.3 467 48.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 3.6e-93 346.3 393 53.4
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.0e-92 344.7 489 46.6
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.0e-92 343.2 467 48.4
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 3.0e-92 343.2 555 44.1
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 6.8e-92 342.0 463 47.5
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 2.0e-91 340.5 478 49.8
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.0e-91 340.5 367 54.0
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.4e-91 339.3 466 48.1
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.1e-89 334.7 469 46.1
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.1e-89 334.7 406 49.8
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.4e-89 333.6 466 46.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.1e-89 332.8 465 48.0
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 4.1e-89 332.8 465 48.0
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.5e-88 329.7 488 45.3
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.3e-87 327.8 478 46.0
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-86 324.7 464 46.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.5e-86 324.3 314 57.3
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-85 321.2 462 45.2
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.8e-85 320.1 462 45.5
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 4.7e-85 319.3 462 45.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.0e-84 318.2 421 47.0
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 5.2e-84 315.8 458 46.5
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 8.9e-84 315.1 431 46.9
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 3.4e-83 313.2 367 50.7
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-83 313.2 463 47.1
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 5.8e-83 312.4 466 46.4
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 9.8e-83 311.6 458 46.1
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.8e-83 311.6 477 45.9
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-82 311.2 477 45.5
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-82 310.5 458 46.1
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 2.2e-82 310.5 458 46.3
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.2e-82 310.5 524 44.1
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 4.9e-82 309.3 477 44.0
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 4.9e-82 309.3 377 51.5
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 4.9e-82 309.3 372 50.8
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 4.9e-82 309.3 386 49.0
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.1e-81 308.1 446 45.1
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-81 308.1 477 45.7
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.0e-81 305.4 477 45.3
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-80 304.7 458 45.6
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.0e-80 303.9 473 44.8
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.0e-80 303.9 436 44.3
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.6e-80 302.8 463 46.0
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 7.8e-80 302.0 475 42.7
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.6e-79 298.9 474 42.8
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 3.3e-78 296.6 647 37.2
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 4.3e-78 296.2 437 45.1
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.6e-78 295.8 475 43.4
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 9.5e-78 295.0 479 44.3
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 9.5e-78 295.0 465 43.7
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.2e-77 294.7 460 43.7
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.6e-77 294.3 467 44.5
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 2.1e-77 293.9 453 43.3
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 2.1e-77 293.9 454 43.6
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.1e-77 293.9 430 43.5
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 4.7e-77 292.7 404 47.8
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.1e-76 291.6 420 45.0
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.4e-76 291.2 471 44.8
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.3e-76 290.4 467 44.3
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 5.2e-76 289.3 471 44.8
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.2e-75 288.1 460 43.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.2e-75 288.1 473 43.3
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.5e-75 287.7 457 45.3
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.5e-75 287.7 387 48.1
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 9.8e-75 285.0 473 41.2
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 9.8e-75 285.0 422 45.0
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.3e-74 284.6 423 45.4
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.2e-74 283.9 471 41.6
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.9e-74 283.5 453 42.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 3.7e-74 283.1 453 42.6
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 3.7e-74 283.1 464 42.9
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 6.4e-74 282.3 412 45.1
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.1e-73 281.6 493 41.4
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 9.2e-73 278.5 472 44.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.6e-72 277.7 447 42.5
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.7e-72 276.9 478 41.8
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.5e-72 276.6 388 45.9
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 3.5e-72 276.6 454 44.5
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 4.6e-72 276.2 472 43.9
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 6.0e-72 275.8 457 42.7
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.0e-71 275.0 384 45.8
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 5.1e-71 272.7 455 41.5
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.3e-70 270.0 457 41.6
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.3e-70 269.6 363 46.3
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 6.2e-69 265.8 273 56.4
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 6.2e-69 265.8 422 44.3
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 8.1e-69 265.4 368 46.7
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.4e-68 264.6 442 40.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 6.8e-68 262.3 200 68.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 7.8e-64 248.8 367 45.8
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 7.8e-64 248.8 361 46.0
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 3.9e-63 246.5 404 42.1
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.1e-63 246.1 140 85.0
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.2e-61 241.5 333 47.1
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 3.6e-61 240.0 207 60.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.5e-59 234.6 454 37.7
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.4e-59 233.4 310 45.5
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.9e-58 230.3 325 45.2
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.9e-57 227.6 471 39.7
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.7e-56 223.8 483 36.9
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.7e-56 223.8 483 36.9
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 4.6e-56 223.0 291 50.9
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.4e-50 202.6 113 87.6
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.7e-47 192.2 130 73.8
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.7e-47 192.2 130 73.8
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.1e-45 187.6 102 88.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.6e-40 171.4 116 77.6
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.8e-37 160.6 275 39.6
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.5e-35 154.8 95 77.9
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.5e-35 154.8 147 55.1
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 2.0e-35 154.5 151 49.7
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.2e-33 147.1 77 93.5
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 3.0e-31 140.6 351 36.5
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 1.1e-28 132.1 401 31.9
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.5e-27 126.7 367 35.1
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 8.4e-26 122.5 164 43.9
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.0e-23 115.5 64 85.9
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 5.9e-19 99.8 94 53.2
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.9e-19 99.8 316 31.6
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.7e-18 98.2 312 33.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 2.2e-18 97.8 106 49.1
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 5.0e-18 96.7 66 69.7
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 1.6e-16 91.7 105 45.7
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.1e-16 91.3 61 70.5
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-16 90.5 55 83.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.4e-12 78.6 92 47.8
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.5e-11 75.1 37 89.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.4e-09 68.6 102 38.2
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.5e-09 67.8 327 27.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 3.6e-08 63.9 35 77.1
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 6.1e-08 63.2 51 58.8
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 7.9e-08 62.8 105 33.3
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.4e-07 62.0 67 52.2
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.6e-06 57.8 76 43.4


User provided reference genes

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