Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.4e-111 406.4 211 100.0
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 4.1e-108 394.8 211 97.6
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 8.9e-103 377.1 211 91.9
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.0e-102 375.9 211 92.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.0e-102 375.9 211 92.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.0e-102 375.9 211 92.4
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.6e-102 375.6 211 92.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 7.5e-102 374.0 211 90.0
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 9.8e-102 373.6 211 90.0
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.7e-101 371.7 211 89.6
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.7e-101 371.7 211 91.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 3.7e-101 371.7 211 89.1
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 4.9e-101 371.3 211 90.5
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 6.4e-101 370.9 211 89.6
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.4e-101 370.9 211 89.6
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 6.4e-101 370.9 211 89.6
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.1e-100 370.2 208 90.9
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.9e-100 369.4 211 89.6
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.4e-100 369.0 211 89.6
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 4.1e-100 368.2 211 88.2
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 5.4e-100 367.9 211 89.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 5.4e-100 367.9 211 88.6
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 5.4e-100 367.9 211 88.6
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 7.0e-100 367.5 211 88.2
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 7.0e-100 367.5 211 89.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 7.0e-100 367.5 211 89.1
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.2e-99 366.7 211 91.5
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.2e-99 366.7 211 90.0
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.2e-99 366.7 211 89.6
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.6e-99 366.3 209 90.0
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.6e-99 366.3 209 89.5
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.6e-99 366.3 211 88.6
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.0e-99 365.9 209 89.5
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.0e-99 365.9 211 89.1
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.0e-99 365.9 211 89.1
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.7e-99 365.5 210 88.6
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.7e-99 365.5 210 89.0
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 2.7e-99 365.5 211 88.2
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.5e-99 365.2 210 89.0
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 3.5e-99 365.2 211 89.6
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.6e-99 364.8 211 88.2
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 6.0e-99 364.4 211 89.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 6.0e-99 364.4 209 89.5
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 6.0e-99 364.4 211 88.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 6.0e-99 364.4 211 88.2
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 7.8e-99 364.0 211 88.6
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 7.8e-99 364.0 209 89.5
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.0e-98 363.6 211 88.6
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.0e-98 363.6 209 89.0
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.3e-98 363.2 211 88.6
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.7e-98 362.8 211 87.7
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.7e-98 362.8 209 88.5
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.7e-98 362.8 211 88.2
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.3e-98 362.5 209 87.6
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.3e-98 362.5 209 87.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.0e-98 362.1 211 86.7
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.0e-98 361.3 209 87.1
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 5.0e-98 361.3 211 87.7
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 6.6e-98 360.9 209 87.6
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 8.6e-98 360.5 211 88.2
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.1e-97 360.1 209 86.6
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.5e-97 359.8 210 87.6
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.9e-97 359.4 209 86.6
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.9e-97 359.4 211 87.7
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.5e-97 359.0 209 86.6
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 2.5e-97 359.0 209 86.6
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.5e-97 359.0 209 88.0
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.3e-97 358.6 211 86.3
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.3e-97 358.6 211 88.2
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 3.3e-97 358.6 211 86.7
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 9.5e-97 357.1 208 88.9
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 2.1e-96 355.9 258 74.8
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 2.1e-96 355.9 211 86.3
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.8e-96 355.5 209 87.6
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 2.8e-96 355.5 209 87.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 3.6e-96 355.1 210 85.7
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 8.0e-96 354.0 212 86.8
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 8.0e-96 354.0 209 87.1
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.0e-96 354.0 212 86.8
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.1e-95 353.6 210 85.2
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.1e-95 353.6 210 85.2
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.1e-95 353.6 210 85.2
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.1e-95 353.6 210 85.2
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.1e-95 353.6 209 85.2
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.1e-95 353.6 209 86.6
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.4e-95 353.2 209 85.6
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.8e-95 352.8 209 87.1
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.8e-95 352.8 209 86.1
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 3.1e-95 352.1 235 80.4
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.0e-95 351.7 209 85.6
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.0e-95 351.7 210 86.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.0e-95 351.7 229 80.8
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.2e-94 350.1 211 85.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.5e-94 349.7 211 84.8
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.6e-94 349.0 211 84.4
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 3.4e-94 348.6 200 88.5
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 5.8e-94 347.8 211 84.4
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 7.5e-94 347.4 211 85.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 9.8e-94 347.1 210 82.9
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.3e-93 346.7 207 86.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.9e-92 342.8 210 84.3
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.7e-90 336.3 211 83.9
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.9e-90 335.1 210 83.8
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 5.1e-90 334.7 211 82.5
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 8.6e-90 334.0 209 84.2
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.2e-88 330.1 208 81.2
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 2.8e-88 328.9 184 90.2
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 4.7e-88 328.2 211 82.0
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 5.2e-87 324.7 243 73.3
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 8.9e-87 323.9 206 80.6
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.9e-85 318.9 210 79.0
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.7e-85 318.5 179 89.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 4.1e-84 315.1 210 78.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 4.1e-84 315.1 210 78.6
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 4.1e-84 315.1 210 78.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 4.1e-84 315.1 210 78.6
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 1.9e-81 306.2 182 86.8
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 2.5e-81 305.8 194 77.3
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.5e-81 305.8 181 85.1
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 5.6e-81 304.7 207 73.9
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 1.1e-79 300.4 209 75.1
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.4e-79 299.3 210 70.5
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 6.8e-79 297.7 208 71.6
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.1e-71 272.3 212 68.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.5e-67 258.8 289 56.1
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 3.5e-67 258.8 449 40.8
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.9e-65 253.1 213 63.4
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 8.4e-61 237.7 133 90.2
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 7.1e-60 234.6 135 87.4
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 6.7e-58 228.0 150 74.7
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.8e-56 222.6 211 62.1
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.0e-54 216.5 131 84.7
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 2.4e-47 193.0 114 86.0
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 1.1e-44 184.1 151 68.2
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 9.0e-39 164.5 152 59.2
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 1.1e-36 157.5 206 51.0
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.9e-34 149.1 84 90.5
Medtr8g027640 Medicago truncatula HOM05D002352 ORTHO05D003724 3.1e-31 139.4 106 71.7
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 3.8e-29 132.5 212 35.8
RhsimUnG0099400 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.9e-26 122.5 76 77.6
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 2.0e-25 120.2 210 38.1
Lj2C285T4 Lonicera japonica HOM05D002352 ORTHO05D003724 1.1e-23 114.4 76 80.3
Dinv07524 Davidia involucrata HOM05D002352 ORTHO05D003724 1.2e-22 110.9 63 84.1
Actinidia28877 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.0e-18 97.8 86 64.0
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.5e-17 94.0 214 32.2
vmacro01392 Vaccinium macrocarpon HOM05D002352 ORTHO05D034960 2.0e-17 93.6 102 52.9
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 8.8e-10 68.2 47 78.7
Lsat_1_v5_gn_8_117380 Lactuca sativa HOM05D002352 ORTHO05D003724 1.5e-09 67.4 52 69.2
Rhsim10G0085900 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.6e-06 57.4 33 84.8
Ah.09g235800 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.5e-06 56.2 32 84.4
Rhsim10G0093300 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.5e-06 55.8 33 81.8


User provided reference genes

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