Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.2e-143 513.1 251 100.0
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 5.4e-107 391.3 238 78.6
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.5e-106 388.7 215 86.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.6e-106 388.3 214 87.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.7e-105 386.3 214 86.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-105 386.3 214 86.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 5.1e-105 384.8 238 80.3
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 6.6e-105 384.4 213 86.4
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.1e-104 383.6 239 79.1
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.8e-103 379.0 213 85.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 6.2e-103 377.9 215 84.7
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 8.1e-103 377.5 215 82.8
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.8e-102 376.3 223 80.3
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.1e-102 375.6 214 84.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 5.2e-102 374.8 225 81.3
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.2e-102 374.8 238 78.6
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.2e-101 373.6 215 81.9
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.5e-101 373.2 253 73.5
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.4e-101 371.7 238 76.5
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 4.4e-101 371.7 239 76.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 4.4e-101 371.7 238 77.3
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 4.4e-101 371.7 226 79.2
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 5.8e-101 371.3 211 84.4
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 5.8e-101 371.3 216 83.3
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 9.9e-101 370.5 212 83.0
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.3e-100 370.2 238 74.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.7e-100 369.8 254 73.6
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.7e-100 369.8 238 78.2
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.7e-100 369.8 229 77.3
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.9e-100 369.0 218 81.7
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.4e-100 367.5 254 72.4
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-99 367.1 254 72.8
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.1e-99 367.1 216 81.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.4e-99 365.9 216 79.6
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 7.1e-99 364.4 232 75.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 9.3e-99 364.0 215 81.9
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.6e-98 363.2 238 75.2
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.1e-98 362.8 216 81.0
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-98 361.7 241 75.1
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 4.6e-98 361.7 217 80.2
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-98 361.3 251 73.3
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 6.0e-98 361.3 241 74.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 6.0e-98 361.3 251 73.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 6.0e-98 361.3 241 74.7
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 7.8e-98 360.9 254 71.7
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 7.8e-98 360.9 254 71.7
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.0e-97 360.5 232 75.9
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.7e-97 359.8 254 71.7
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.7e-97 359.8 208 82.2
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.3e-97 359.4 248 73.8
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.0e-97 359.0 251 72.9
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.0e-97 359.0 220 78.6
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.0e-97 359.0 220 78.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.6e-97 357.8 229 76.4
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-96 356.3 227 78.0
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.5e-96 355.9 226 78.3
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 3.3e-96 355.5 224 77.7
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 4.3e-96 355.1 227 76.7
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 4.3e-96 355.1 222 79.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 5.6e-96 354.8 213 79.8
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.3e-96 354.4 225 76.9
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 9.6e-96 354.0 220 78.2
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.6e-95 353.2 219 78.1
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.6e-95 353.2 213 79.3
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 2.8e-95 352.4 213 79.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 4.8e-95 351.7 231 75.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.8e-95 351.7 212 79.2
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.1e-94 350.5 224 76.8
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.8e-94 349.7 228 75.0
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 2.4e-94 349.4 223 75.8
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 4.0e-94 348.6 215 78.1
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 6.9e-94 347.8 248 69.4
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.0e-94 347.4 213 79.8
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-93 346.7 215 76.3
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.0e-93 346.3 215 77.7
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 4.4e-93 345.1 215 76.7
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 7.6e-93 344.4 216 78.7
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.7e-92 343.2 228 73.2
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.7e-92 343.2 211 76.8
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.2e-92 342.8 235 72.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.2e-92 342.8 235 72.3
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 6.4e-92 341.3 229 72.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 6.4e-92 341.3 210 78.1
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 8.4e-92 340.9 233 71.7
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 8.4e-92 340.9 226 72.6
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-91 340.5 236 71.6
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.1e-91 340.5 235 71.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.9e-91 339.7 239 71.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.2e-91 338.6 223 75.8
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.2e-91 338.6 223 75.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 4.2e-91 338.6 208 78.4
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 4.2e-91 338.6 224 75.9
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.2e-90 337.0 223 75.3
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.1e-90 336.3 219 73.1
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-90 335.1 222 74.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.6e-90 335.1 236 71.2
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 6.0e-90 334.7 215 75.8
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 6.0e-90 334.7 223 73.5
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 6.0e-90 334.7 226 72.6
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.0e-89 334.0 232 72.8
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.3e-89 332.8 227 71.8
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-89 332.4 245 69.8
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 3.9e-89 332.0 223 74.4
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 5.1e-89 331.6 222 74.8
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.1e-89 331.6 226 73.5
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.6e-89 331.3 232 71.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.5e-88 330.1 213 74.2
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.5e-88 330.1 244 69.7
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.5e-88 330.1 244 69.7
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.5e-88 329.3 222 73.9
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.3e-88 328.9 215 73.5
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.3e-87 327.0 212 74.5
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.3e-87 327.0 215 74.4
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.3e-87 327.0 229 72.1
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.8e-87 325.9 214 74.8
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.8e-87 325.1 213 73.7
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.2e-87 324.7 220 72.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.3e-86 321.6 212 75.0
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.5e-85 318.5 217 69.6
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 9.9e-85 317.4 213 72.8
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.3e-84 317.0 217 69.6
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.7e-84 316.6 219 72.6
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.2e-84 316.2 183 82.0
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.9e-84 315.8 212 72.2
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 2.9e-84 315.8 207 74.9
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.1e-83 313.9 209 70.8
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-83 313.9 219 71.2
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.9e-83 313.2 219 71.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.7e-82 309.3 213 68.5
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.3e-81 306.2 228 68.4
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-80 303.1 212 67.9
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-80 303.1 212 67.9
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 4.3e-80 302.0 212 68.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 7.4e-80 301.2 212 67.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 7.4e-80 301.2 212 67.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 7.4e-80 301.2 212 67.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.6e-79 300.1 203 73.9
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.8e-79 298.5 217 66.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-78 297.0 221 67.4
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.8e-77 291.6 181 78.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.0e-76 290.8 173 79.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.7e-68 263.5 243 58.0
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.8e-68 262.3 267 55.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.2e-67 258.8 216 63.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.5e-64 250.4 217 63.1
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-64 249.6 215 59.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 4.8e-63 245.4 152 80.3
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.4e-62 243.8 152 79.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 9.0e-62 241.1 226 56.6
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 6.5e-60 235.0 218 56.4
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 7.9e-58 228.0 134 83.6
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 4.3e-56 222.2 237 51.5
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 2.9e-52 209.5 231 50.2
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.4e-49 200.7 216 49.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 5.7e-40 168.7 176 55.1
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.7e-39 167.2 139 61.2
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.8e-39 166.4 169 50.3
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.8e-31 139.8 96 72.9
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 3.0e-25 119.8 77 68.8
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.1e-18 95.5 61 67.2
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.0e-13 80.5 69 53.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 5.9e-13 79.0 89 47.2
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 5.0e-12 75.9 72 55.6
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 6.6e-12 75.5 82 47.6
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.6e-10 70.9 44 77.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.4e-09 67.8 81 49.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.4e-08 62.8 40 72.5


User provided reference genes

Program Settings