Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 4.1e-111 404.8 220 100.0
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 6.5e-72 274.6 221 67.4
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 4.3e-68 261.9 219 64.4
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.5e-65 251.9 220 62.3
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 2.9e-64 249.2 218 60.6
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 6.5e-64 248.1 219 60.7
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.1e-63 247.3 218 60.6
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.5e-63 246.1 218 59.2
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.2e-63 245.7 218 58.7
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.5e-63 245.0 218 59.2
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 5.5e-63 245.0 221 60.6
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 9.4e-63 244.2 220 60.0
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 3.6e-62 242.3 220 58.2
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 6.1e-62 241.5 219 62.6
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.3e-61 239.6 219 59.4
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 3.0e-61 239.2 218 59.2
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 3.0e-61 239.2 218 58.7
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 8.8e-61 237.7 223 56.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 2.0e-60 236.5 218 60.6
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 3.3e-60 235.7 221 59.3
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 3.3e-60 235.7 221 59.3
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 4.4e-60 235.3 220 58.2
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 1.7e-59 233.4 148 78.4
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 2.2e-59 233.0 222 57.2
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 2.8e-59 232.6 222 57.2
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 4.8e-59 231.9 217 57.6
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 4.8e-59 231.9 219 58.4
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 8.2e-59 231.1 221 59.7
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 4.1e-58 228.8 225 58.7
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 4.1e-58 228.8 219 59.8
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 9.1e-58 227.6 231 55.4
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.2e-57 227.3 224 57.6
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.5e-57 226.9 224 54.5
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 5.9e-57 224.9 219 58.0
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.3e-56 223.8 219 55.3
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.7e-56 223.4 221 53.8
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 2.2e-56 223.0 233 54.5
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 3.8e-56 222.2 217 57.1
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 6.5e-56 221.5 256 51.6
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 8.5e-56 221.1 218 58.7
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.9e-55 219.9 219 55.3
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 2.5e-55 219.5 218 55.5
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 4.2e-55 218.8 218 57.3
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 7.2e-55 218.0 218 55.5
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 9.4e-55 217.6 140 73.6
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 9.4e-55 217.6 220 54.1
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.7e-54 216.1 218 55.0
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.8e-53 213.4 230 55.2
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.8e-53 213.4 219 53.0
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 2.3e-53 213.0 223 52.9
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 5.2e-53 211.8 222 53.6
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 5.2e-53 211.8 224 54.0
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 8.8e-53 211.1 217 55.3
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.1e-52 210.7 220 54.1
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 1.5e-52 210.3 224 54.0
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.5e-52 210.3 218 53.7
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 1.5e-52 210.3 227 54.6
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 2.0e-52 209.9 207 57.0
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.6e-52 209.5 224 52.2
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 2.2e-51 206.5 226 56.6
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 2.2e-51 206.5 167 62.3
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 2.8e-51 206.1 158 65.2
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.8e-51 206.1 231 52.8
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 4.8e-51 205.3 232 53.4
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.4e-50 203.0 189 58.7
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 3.1e-50 202.6 218 53.2
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 9.1e-50 201.1 226 54.4
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.2e-49 200.7 222 51.4
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 7.7e-49 198.0 222 51.4
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 7.7e-49 198.0 242 47.5
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 1.0e-48 197.6 220 51.8
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.3e-48 197.2 221 50.2
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.3e-48 197.2 222 50.9
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.5e-47 193.7 182 57.7
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.9e-47 193.4 290 44.5
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.9e-47 193.4 250 48.0
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 2.5e-47 193.0 220 51.8
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 7.2e-47 191.4 180 57.2
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 1.6e-46 190.3 180 57.2
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 2.7e-46 189.5 219 49.8
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 2.7e-46 189.5 219 49.8
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 8.0e-46 188.0 264 44.7
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.0e-45 187.6 126 74.6
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.5e-44 183.7 160 59.4
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.6e-44 183.0 219 49.8
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 3.3e-44 182.6 220 48.6
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 1.3e-43 180.6 243 47.3
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 2.4e-42 176.4 218 46.3
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 2.4e-42 176.4 219 47.9
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 4.1e-42 175.6 203 49.3
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 5.9e-41 171.8 144 59.0
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 2.2e-40 169.9 173 54.3
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 3.4e-36 156.0 109 66.1
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.2e-30 137.5 124 59.7
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 8.8e-29 131.3 165 49.1
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.2e-28 131.0 218 40.4
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 7.5e-28 128.3 79 77.2
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.0e-25 120.2 218 37.6
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 6.1e-22 108.6 70 68.6
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 3.0e-21 106.3 81 59.3
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.8e-21 105.1 151 43.7
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 6.8e-21 105.1 70 74.3
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.0e-20 103.6 149 43.6
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 3.4e-20 102.8 142 47.9
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 2.4e-18 96.7 115 47.0
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 4.6e-17 92.4 80 51.2
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 3.0e-16 89.7 80 51.2
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 1.2e-14 84.3 54 74.1
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.2e-11 73.6 46 69.6
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.4e-10 70.9 115 41.7
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 5.0e-08 62.4 104 31.7
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 1.1e-07 61.2 104 29.8
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 1.1e-07 61.2 104 30.8
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 4.3e-07 59.3 136 28.7
Lj4A625G10 Lonicera japonica HOM05D005920 ORTHO05D007211 9.5e-07 58.2 121 29.8
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 2.1e-06 57.0 135 28.9
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 2.1e-06 57.0 139 28.1
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 2.1e-06 57.0 139 28.1
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 2.1e-06 57.0 62 50.0
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 2.8e-06 56.6 140 30.0
Duzib093G1431 Durio zibethinus HOM05D005920 ORTHO05D007211 2.8e-06 56.6 127 29.1
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 2.8e-06 56.6 132 30.3
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 2.8e-06 56.6 141 29.1
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.8e-06 56.6 129 28.7
MSTRG.1445 Avicennia marina HOM05D005920 ORTHO05D007211 3.6e-06 56.2 136 29.4
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 4.7e-06 55.8 128 26.6
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 4.7e-06 55.8 128 25.8
Aqoxy6G00210 Aquilegia oxysepala HOM05D005920 ORTHO05D007211 6.2e-06 55.5 140 29.3
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 6.2e-06 55.5 140 27.1
A02p26870 Brassica napus HOM05D005920 ORTHO05D007211 6.2e-06 55.5 139 27.3
BraA02t07698Z Brassica rapa HOM05D005920 ORTHO05D007211 6.2e-06 55.5 139 27.3


User provided reference genes

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