Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.6e-225 785.8 414 100.0
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.4e-189 666.4 415 84.6
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 2.1e-188 662.5 414 84.3
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.6e-188 661.4 414 84.1
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.6e-188 661.4 414 84.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.3e-187 659.8 414 84.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.9e-186 656.0 414 83.6
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.5e-186 655.6 413 83.8
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 5.7e-186 654.4 415 83.4
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 4.8e-185 651.4 414 82.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.0e-183 646.0 415 82.2
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 3.4e-183 645.2 412 84.0
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.8e-182 641.7 415 81.4
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 6.5e-182 641.0 414 81.6
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 6.5e-182 641.0 419 82.1
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 6.5e-182 641.0 414 82.4
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 8.4e-182 640.6 414 82.1
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.1e-181 640.2 423 80.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.9e-181 639.4 414 82.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 7.9e-180 634.0 418 80.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.0e-179 633.6 414 81.6
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.0e-179 633.6 414 81.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.8e-179 632.9 413 80.6
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 8.7e-179 630.6 414 80.4
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.7e-179 630.6 415 79.5
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.3e-178 628.2 418 79.7
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.3e-178 628.2 415 79.5
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 7.4e-178 627.5 414 80.9
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 3.7e-177 625.2 414 80.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 6.3e-177 624.4 416 81.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.1e-176 623.6 451 75.8
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 6.9e-176 620.9 412 79.4
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 9.0e-176 620.5 414 79.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.2e-175 620.2 414 80.2
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.5e-175 619.8 414 79.2
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.0e-175 619.4 414 79.2
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.0e-175 619.4 415 78.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 2.6e-175 619.0 428 77.1
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.4e-175 618.6 409 79.0
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 4.5e-175 618.2 416 78.6
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 7.7e-175 617.5 418 77.8
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.0e-174 617.1 429 77.2
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.0e-174 617.1 418 78.2
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.2e-174 615.9 419 78.3
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.2e-174 615.9 425 78.4
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.9e-174 615.5 414 79.2
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.8e-174 615.1 422 78.0
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.5e-174 614.0 425 78.1
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.5e-173 612.5 415 77.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 7.2e-173 610.9 427 77.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 7.2e-173 610.9 414 77.8
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 9.4e-173 610.5 415 78.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.2e-172 610.1 416 77.4
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.2e-172 610.1 414 77.5
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 3.6e-172 608.6 415 77.8
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 4.6e-172 608.2 414 78.0
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.6e-172 608.2 414 76.6
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.4e-171 606.7 414 76.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-171 606.3 445 74.8
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 3.0e-171 605.5 415 77.3
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.0e-171 605.5 445 74.6
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 3.9e-171 605.1 418 76.8
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 5.1e-171 604.7 416 76.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 6.7e-171 604.4 418 76.1
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 8.8e-171 604.0 412 78.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.5e-170 603.2 414 76.1
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.0e-170 602.8 421 76.5
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.0e-170 602.8 415 75.4
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.3e-170 602.1 418 76.3
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.3e-170 602.1 416 76.7
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 4.3e-170 601.7 414 76.6
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 9.7e-170 600.5 417 77.5
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.7e-169 599.7 421 77.0
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.1e-168 597.0 432 74.5
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.4e-168 596.7 415 77.1
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.8e-168 596.3 415 76.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 2.4e-168 595.9 414 75.4
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 6.9e-168 594.3 416 76.0
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 9.1e-168 594.0 418 75.4
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.5e-167 593.2 410 77.1
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.7e-166 589.7 416 75.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 2.2e-166 589.3 361 85.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.8e-166 588.6 417 75.3
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.8e-166 588.6 414 76.3
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 5.0e-166 588.2 417 75.3
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 9.4e-165 583.9 425 74.1
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.6e-164 583.2 418 74.4
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 4.7e-164 581.6 423 73.5
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.7e-163 577.8 411 74.2
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.7e-163 577.8 411 74.2
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.4e-162 575.1 426 72.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 5.7e-162 574.7 417 74.1
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 7.4e-162 574.3 415 72.8
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.2e-161 572.8 420 73.3
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.1e-160 568.5 415 74.5
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 7.0e-160 567.8 342 86.3
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.2e-159 567.0 420 74.5
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.0e-158 563.9 361 80.9
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.0e-158 563.9 361 80.9
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 2.9e-158 562.4 416 71.9
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.6e-156 556.6 396 75.0
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 4.4e-154 548.5 350 79.1
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 5.3e-152 541.6 414 69.3
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 7.2e-149 531.2 482 64.9
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 7.2e-149 531.2 482 64.9
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.8e-147 526.6 414 71.0
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.8e-145 518.5 316 85.1
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.2e-142 509.6 355 75.5
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.2e-140 503.8 421 67.7
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.8e-139 500.0 414 67.1
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.0e-134 481.9 360 72.8
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 6.6e-134 481.5 416 60.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.7e-126 456.8 424 57.1
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 7.0e-120 434.9 431 59.9
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.5e-114 417.2 272 79.8
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.4e-113 411.8 410 58.3
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 9.2e-112 407.9 387 56.8
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 8.6e-102 374.8 345 60.9
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 8.6e-102 374.8 324 66.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.1e-100 370.2 361 61.8
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.0e-86 323.2 316 54.7
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.0e-83 312.8 422 45.0
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.9e-79 298.5 270 61.9
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 4.9e-73 279.3 423 40.9
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.5e-69 267.7 472 37.1
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.4e-67 260.4 469 37.7
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.4e-64 251.1 326 46.9
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.7e-58 228.8 126 86.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-56 224.2 134 84.3
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.7e-55 220.3 316 43.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.2e-50 204.9 348 37.9
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 4.2e-48 196.4 336 35.7
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.9e-46 189.9 104 88.5
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.1e-45 188.3 104 87.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.9e-40 171.0 128 71.1
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.6e-39 166.8 131 67.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.6e-34 151.4 98 79.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.4e-32 142.1 115 71.3
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 7.0e-27 125.9 129 55.8
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.2e-22 109.8 58 82.8
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.7e-18 97.4 71 71.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.7e-18 97.4 138 42.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.0e-17 93.2 103 54.4
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 7.3e-16 89.4 65 69.2
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 5.7e-13 79.7 100 49.0
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.9e-12 77.4 96 45.8
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 5.9e-10 69.7 60 66.7
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.0e-09 68.9 50 64.0
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-09 68.9 42 83.3
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.2e-07 62.0 60 56.7
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.2e-07 62.0 64 59.4
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 1.2e-07 62.0 66 59.1
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.1e-07 61.2 50 58.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 8.0e-07 59.3 35 82.9
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 8.0e-07 59.3 35 82.9
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 8.0e-07 59.3 35 82.9
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.4e-06 58.5 41 68.3
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 120 28.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 57.8 120 28.3
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 2.3e-06 57.8 120 28.3
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 3.1e-06 57.4 120 27.5
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 57.0 120 28.3


User provided reference genes

Program Settings