Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 1.3e-34 149.1 68 100.0
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 5.9e-24 113.6 71 71.8
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 5.9e-24 113.6 68 75.0
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 3.8e-23 110.9 66 71.2
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 8.5e-23 109.8 65 73.8
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 1.5e-22 109.0 68 77.9
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 3.2e-22 107.8 66 71.2
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 4.2e-22 107.5 71 71.8
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 5.5e-22 107.1 68 69.1
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 1.2e-21 105.9 69 71.0
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 1.6e-21 105.5 67 76.1
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 1.6e-21 105.5 72 72.2
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 2.7e-21 104.8 71 71.8
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.0e-20 102.8 72 65.3
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.4e-20 102.4 73 68.5
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 2.3e-20 101.7 70 74.3
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 3.0e-20 101.3 69 65.2
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 6.8e-20 100.1 68 66.2
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 1.2e-19 99.4 70 71.4
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 1.5e-19 99.0 67 68.7
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 2.6e-19 98.2 68 64.7
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 4.4e-19 97.4 71 70.4
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 5.7e-19 97.1 68 69.1
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 7.5e-19 96.7 68 69.1
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 7.5e-19 96.7 66 71.2
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 7.5e-19 96.7 68 67.6
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.3e-18 95.9 70 65.7
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 1.7e-18 95.5 66 71.2
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 2.8e-18 94.7 69 66.7
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 3.7e-18 94.4 66 69.7
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 4.8e-18 94.0 67 65.7
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 8.3e-18 93.2 68 64.7
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 8.3e-18 93.2 70 67.1
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 3.1e-17 91.3 69 68.1
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 4.1e-17 90.9 74 62.2
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 5.3e-17 90.5 62 72.6
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 5.3e-17 90.5 62 72.6
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 5.3e-17 90.5 68 63.2
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 1.2e-16 89.4 68 66.2
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 2.0e-16 88.6 69 63.8
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 7.7e-16 86.7 66 62.1
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 7.7e-16 86.7 71 59.2
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 1.7e-15 85.5 74 58.1
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 3.8e-15 84.3 65 63.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.8e-15 84.3 65 63.1
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 3.8e-15 84.3 65 61.5
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 6.5e-15 83.6 66 62.1
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 6.5e-15 83.6 66 62.1
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 6.5e-15 83.6 66 62.1
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 6.5e-15 83.6 65 61.5
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 6.5e-15 83.6 66 62.1
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 6.5e-15 83.6 68 58.8
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 8.5e-15 83.2 66 60.6
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 8.5e-15 83.2 57 68.4
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 1.5e-14 82.4 66 62.1
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 1.5e-14 82.4 64 60.9
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 1.5e-14 82.4 61 63.9
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 1.9e-14 82.0 67 65.7
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 2.5e-14 81.6 63 60.3
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 4.2e-14 80.9 65 58.5
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 5.5e-14 80.5 66 62.1
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 5.5e-14 80.5 63 61.9
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 5.5e-14 80.5 66 59.1
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 9.4e-14 79.7 68 60.3
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 1.6e-13 79.0 67 59.7
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 2.1e-13 78.6 65 60.0
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 4.7e-13 77.4 69 56.5
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 1.0e-12 76.3 63 60.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.0e-12 76.3 65 60.0
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 1.0e-12 76.3 63 60.3
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 1.0e-12 76.3 63 61.9
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 1.0e-12 76.3 63 60.3
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.0e-12 76.3 65 60.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 4.0e-12 74.3 63 58.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 8.8e-12 73.2 57 59.6
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 1.2e-11 72.8 70 52.9
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 2.0e-11 72.0 40 80.0
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 2.6e-11 71.6 62 54.8
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 7.5e-11 70.1 68 54.4
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 9.8e-11 69.7 66 57.6
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 1.4e-09 65.9 41 63.4
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.4e-09 65.9 74 51.4
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 5.4e-09 63.9 74 50.0
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 9.1e-09 63.2 74 50.0
Os09g0480100 Oryza sativa ssp. japonica HOM05D007771 ORTHO05D009850 1.2e-08 62.8 67 43.3
Prupe.6G032000 Prunus persica HOM05D007771 ORTHO05D009850 7.7e-08 60.1 42 66.7
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 1.3e-07 59.3 63 46.0
Zm00001eb316200 Zea mays HOM05D007771 ORTHO05D009850 3.8e-07 57.8 68 44.1
HPP92_017988 Vanilla planifolia HOM05D007771 ORTHO05D009850 1.9e-06 55.5 69 49.3
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 2.5e-06 55.1 36 63.9
Lalb_Chr04g0247701 Lupinus albus HOM05D007771 ORTHO05D009850 4.2e-06 54.3 40 62.5


User provided reference genes

Program Settings