Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.4e-178 629.4 304 100.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 4.4e-119 431.8 278 74.5
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 2.2e-118 429.5 286 73.4
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 4.1e-117 425.2 283 73.5
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.2e-116 423.7 294 70.7
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.0e-116 422.9 280 72.9
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 4.5e-116 421.8 277 74.4
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.3e-115 420.2 269 76.6
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.3e-115 420.2 275 74.2
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.2e-115 419.5 271 74.5
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 2.9e-115 419.1 290 71.7
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 6.5e-115 417.9 275 73.5
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 8.5e-115 417.5 284 71.8
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.1e-114 417.2 282 70.9
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.5e-114 416.8 264 75.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.9e-114 416.4 269 75.8
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 2.5e-114 416.0 284 69.7
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 4.2e-114 415.2 286 70.6
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 4.2e-114 415.2 290 70.7
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 7.2e-114 414.5 274 74.1
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.6e-113 413.3 271 73.8
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 6.1e-113 411.4 265 76.2
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 4.0e-112 408.7 282 71.3
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 8.8e-112 407.5 282 73.4
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 2.0e-111 406.4 278 72.7
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 7.5e-111 404.4 236 80.1
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.7e-110 403.3 236 80.1
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.8e-110 402.5 297 69.0
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 8.3e-110 401.0 231 81.4
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.1e-109 400.6 231 81.0
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.4e-109 400.2 257 75.5
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 4.1e-109 398.7 236 79.7
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 2.7e-108 396.0 302 64.9
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 4.5e-108 395.2 220 85.0
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 4.5e-108 395.2 269 70.6
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 4.5e-108 395.2 218 85.3
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 5.9e-108 394.8 305 66.2
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 5.9e-108 394.8 300 67.7
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.0e-107 394.0 249 76.7
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 1.3e-107 393.7 249 77.1
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 2.3e-107 392.9 237 76.8
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.9e-107 392.5 236 77.5
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 1.5e-106 390.2 247 76.9
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.9e-106 389.8 248 76.6
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.9e-106 389.8 235 78.3
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.5e-106 389.4 288 66.0
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 2.5e-106 389.4 263 70.3
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 4.2e-106 388.7 281 66.9
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 5.5e-106 388.3 232 80.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 7.2e-106 387.9 260 74.6
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 7.2e-106 387.9 283 68.6
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.1e-105 386.3 282 66.0
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 8.0e-105 384.4 285 66.7
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.4e-104 383.6 257 69.3
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 4.0e-104 382.1 267 70.8
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 4.0e-104 382.1 233 76.4
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 6.8e-104 381.3 220 81.4
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.3e-102 377.1 216 82.9
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 2.8e-102 375.9 220 80.5
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 4.9e-102 375.2 276 68.5
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 8.3e-102 374.4 315 60.0
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 2.4e-101 372.9 259 71.0
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 3.2e-101 372.5 231 75.3
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 5.4e-101 371.7 229 74.7
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 5.4e-101 371.7 220 76.8
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 5.4e-101 371.7 237 73.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 7.0e-101 371.3 231 74.9
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 9.2e-101 370.9 221 79.2
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 2.0e-100 369.8 232 76.3
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 3.5e-100 369.0 245 71.0
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.7e-99 366.7 237 72.2
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 5.0e-99 365.2 228 73.7
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 5.0e-99 365.2 231 73.6
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.1e-98 364.0 222 75.7
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.5e-98 363.6 234 71.8
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 2.5e-98 362.8 284 63.4
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.3e-96 356.3 237 70.0
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 4.0e-96 355.5 237 69.6
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 4.0e-96 355.5 237 69.6
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 4.0e-96 355.5 237 69.6
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.0e-95 353.2 280 65.7
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 5.8e-95 351.7 307 62.2
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 6.4e-94 348.2 218 71.6
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 2.4e-93 346.3 226 73.9
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 2.4e-93 346.3 225 71.1
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.8e-88 330.1 192 79.7
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 2.0e-87 326.6 216 69.0
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 7.5e-87 324.7 225 67.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.3e-86 323.9 186 82.3
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 6.4e-86 321.6 174 87.4
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.1e-85 320.9 247 66.8
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 5.4e-85 318.5 226 69.9
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.0e-83 314.3 231 67.1
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.7e-83 313.5 234 67.1
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 5.6e-82 308.5 286 57.3
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 4.0e-80 302.4 176 81.2
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.2e-79 300.8 200 72.5
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.7e-78 297.0 178 76.4
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.1e-76 290.0 178 75.3
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 2.7e-76 289.7 218 61.5
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 4.6e-68 262.3 164 79.9
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 2.3e-59 233.4 174 64.9
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 4.9e-54 215.7 150 71.3
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-53 214.5 115 87.8
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.2e-53 213.0 115 87.0
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 7.9e-52 208.4 221 46.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.8e-51 207.2 148 66.2
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.5e-50 204.1 221 45.7
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.8e-49 199.9 233 44.6
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.4e-48 196.8 175 59.4
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.6e-47 193.4 224 47.3
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 7.9e-44 181.8 105 83.8
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.0e-43 181.4 218 44.0
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-39 167.9 97 81.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-39 167.9 97 81.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 7.9e-36 155.2 106 68.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 7.7e-31 138.7 106 67.0
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.2e-30 137.1 135 57.0
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.2e-30 137.1 135 57.0
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 6.7e-27 125.6 156 50.0
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-26 124.8 79 74.7
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.0e-22 109.4 61 82.0
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.3e-19 100.5 56 83.9
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.1e-18 98.2 123 51.2
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.4e-16 90.5 50 84.0
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 4.1e-16 89.7 112 52.7
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 4.1e-16 89.7 122 45.9
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 4.1e-16 89.7 112 52.7
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 3.2e-13 80.1 98 46.9
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 9.7e-10 68.6 48 64.6
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 1.6e-07 61.2 175 29.1
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 3.5e-07 60.1 36 80.6
PGR031G0204 Punica granatum HOM05D000450 ORTHO05D000327 5.9e-07 59.3 224 27.2
CANSAT25G1010 Cannabis sativa HOM05D000450 ORTHO05D000327 1.7e-06 57.8 185 27.6
ClCG08G014410 Citrullus lanatus HOM05D000450 ORTHO05D000327 1.7e-06 57.8 199 27.6
MBI07_g30978_MAGBIO Magnolia biondii HOM05D000450 ORTHO05D000327 1.7e-06 57.8 193 27.5
Prupe.6G236000 Prunus persica HOM05D000450 ORTHO05D000327 2.2e-06 57.4 195 28.2
HPP92_008889 Vanilla planifolia HOM05D000450 ORTHO05D000327 2.2e-06 57.4 200 30.0
SalBow1G1243 Salvia bowleyana HOM05D000450 ORTHO05D000327 2.9e-06 57.0 202 29.7
Nn2g14265 Nelumbo nucifera HOM05D000450 ORTHO05D000327 3.8e-06 56.6 252 26.2
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 3.8e-06 56.6 36 72.2
CANSAT80G1886 Cannabis sativa HOM05D000450 ORTHO05D000327 5.0e-06 56.2 195 28.2
AUR62035741 Chenopodium quinoa HOM05D000450 ORTHO05D000327 5.0e-06 56.2 193 25.9
FAN05G0193 Fragaria x ananassa HOM05D000450 ORTHO05D000327 5.0e-06 56.2 215 26.5
Os10g0479500 Oryza sativa ssp. japonica HOM05D000450 ORTHO05D000327 6.5e-06 55.8 176 29.5
Sabra06G0100300 Salix brachista HOM05D000450 ORTHO05D000327 6.5e-06 55.8 190 26.8
Manes.08G031900 Manihot esculenta HOM05D000450 ORTHO05D000327 8.5e-06 55.5 185 29.7
PGR004G1165 Punica granatum HOM05D000450 ORTHO05D000327 8.5e-06 55.5 220 26.4


User provided reference genes

Program Settings