Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.8e-290 1001.9 509 100.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.0e-201 706.1 506 69.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.9e-199 699.5 515 68.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.6e-198 696.4 504 69.6
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.3e-197 692.6 517 67.1
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 3.0e-197 692.2 504 69.4
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 6.7e-197 691.0 532 65.2
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.1e-196 690.3 510 67.8
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.9e-196 689.5 503 67.6
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 7.4e-196 687.6 516 67.1
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 9.7e-196 687.2 503 67.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.3e-195 686.8 518 66.6
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.2e-195 686.0 503 67.4
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.8e-195 685.6 503 67.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 3.1e-194 682.2 509 66.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 6.9e-194 681.0 463 73.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 9.1e-194 680.6 519 64.9
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-193 680.2 512 67.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-193 680.2 512 67.4
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.5e-193 679.9 509 66.6
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.4e-193 678.7 506 66.6
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-192 677.2 512 67.0
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-192 677.2 512 67.0
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.0e-192 677.2 514 66.5
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.3e-192 676.8 520 65.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.7e-192 676.4 518 65.1
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.9e-192 675.6 518 65.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 5.0e-192 674.9 506 66.2
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 8.5e-192 674.1 510 66.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.5e-192 674.1 506 66.6
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-191 673.3 513 65.9
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.4e-191 673.3 519 64.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-191 672.9 517 66.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.9e-191 672.9 511 65.8
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.9e-191 672.9 517 65.6
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-191 672.2 517 66.0
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 4.2e-191 671.8 513 65.3
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 4.2e-191 671.8 521 66.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.5e-191 671.4 516 65.9
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 9.4e-191 670.6 518 64.9
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.1e-190 669.5 506 66.2
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 3.6e-190 668.7 507 64.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 4.7e-190 668.3 525 64.4
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 4.7e-190 668.3 514 66.3
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 7.9e-190 667.5 519 64.0
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.4e-189 666.8 512 65.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.3e-189 666.0 546 61.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.9e-189 665.2 513 65.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 6.7e-189 664.5 536 64.0
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.3e-188 662.1 516 64.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.3e-188 662.1 502 65.5
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.7e-187 659.8 505 65.1
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.2e-187 659.4 519 63.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 8.2e-187 657.5 515 63.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 5.9e-185 651.4 518 63.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 5.9e-185 651.4 518 63.5
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.8e-184 648.7 533 64.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.8e-184 648.7 533 64.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 8.5e-184 647.5 502 64.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 8.5e-184 647.5 502 64.3
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.4e-183 646.7 515 63.3
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.6e-182 643.3 502 62.5
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.1e-182 642.9 506 63.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 8.0e-182 641.0 523 62.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.0e-181 640.6 521 62.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.0e-181 640.6 506 63.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.9e-181 638.6 516 61.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 5.2e-181 638.3 515 61.6
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 8.8e-181 637.5 474 65.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.1e-180 637.1 534 62.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 4.4e-180 635.2 516 62.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.7e-180 634.8 506 64.0
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 9.7e-180 634.0 536 62.1
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.8e-179 632.5 482 65.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.7e-179 632.1 510 62.7
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.1e-178 630.6 542 61.4
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.4e-178 630.2 536 61.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-178 629.8 525 61.5
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.4e-178 629.4 524 62.0
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 5.3e-178 628.2 550 60.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 9.1e-178 627.5 524 61.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-177 627.1 528 61.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-177 626.7 518 62.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.0e-177 626.3 547 61.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 2.6e-177 625.9 518 62.7
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.9e-177 624.8 516 62.6
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.7e-177 624.4 533 60.8
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-176 623.6 516 62.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.7e-174 615.9 511 61.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 8.0e-174 614.4 516 60.9
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.4e-173 613.6 517 59.4
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 6.7e-173 611.3 519 62.2
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.2e-171 606.3 527 58.4
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 5.3e-170 601.7 502 61.4
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 2.7e-169 599.4 400 71.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 8.5e-168 594.3 455 64.0
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.4e-167 590.9 527 58.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.4e-167 590.9 495 58.2
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.6e-166 590.1 527 58.6
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 6.1e-166 588.2 523 59.3
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.3e-165 586.3 455 61.1
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.0e-165 585.9 511 57.9
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.4e-164 582.4 464 59.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 4.4e-164 582.0 515 59.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 5.4e-162 575.1 393 70.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 5.9e-161 571.6 454 62.6
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.9e-160 569.3 518 55.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 7.0e-154 548.1 442 62.9
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-152 543.9 440 59.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 6.8e-149 531.6 465 59.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.4e-147 525.0 382 65.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-143 512.7 422 61.8
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 4.3e-143 512.3 311 77.8
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 8.0e-142 508.1 507 53.5
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.7e-139 499.2 290 81.0
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 7.8e-137 491.5 306 75.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.6e-134 482.6 311 71.4
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.4e-130 469.9 313 70.0
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 5.6e-119 432.2 382 57.3
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 6.9e-117 425.2 288 69.8
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.7e-112 410.6 470 44.5
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.5e-108 397.5 570 40.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.6e-108 396.7 512 42.4
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 4.5e-108 396.0 246 78.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 8.4e-107 391.7 265 72.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.7e-105 386.7 238 76.9
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.9e-87 327.4 475 43.2
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.4e-84 316.6 199 74.9
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.3e-80 303.9 339 50.7
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 3.9e-80 303.1 200 72.0
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 5.0e-75 286.2 243 60.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.5e-74 283.9 315 48.9
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.8e-70 270.4 166 78.9
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.6e-68 263.8 271 53.9
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.2e-54 217.6 109 98.2
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 5.3e-53 213.0 212 52.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 5.3e-53 213.0 212 52.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-52 211.5 210 55.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-50 203.0 398 31.7
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-47 194.1 129 69.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.6e-47 194.1 129 69.0
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 9.8e-47 192.2 211 48.3
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 6.3e-46 189.5 123 70.7
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.8e-43 180.3 189 47.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.9e-35 153.7 106 65.1
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 7.3e-34 149.4 165 49.1
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.4e-32 145.2 98 71.4
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 3.1e-32 144.1 240 37.9
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.9e-32 142.5 154 48.1
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.2e-31 142.1 156 48.1
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.4e-31 140.6 167 43.7
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 6.4e-30 136.3 263 34.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-26 125.6 76 73.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-26 125.6 76 73.7
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 8.0e-25 119.4 109 59.6
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.5e-23 115.2 85 62.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-23 115.2 105 52.4
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.4e-23 114.0 176 45.5
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 7.3e-18 96.3 91 58.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 9.5e-18 95.9 73 65.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-14 82.8 57 66.7
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 6.6e-11 73.2 83 45.8
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 6.8e-08 63.2 34 91.2
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 2.0e-07 61.6 159 35.8


User provided reference genes

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