Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 9.4e-74 280.0 134 100.0
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 2.3e-19 99.4 109 48.6
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 8.6e-19 97.4 110 50.9
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.5e-18 96.7 112 50.0
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 1.6e-17 93.2 110 46.4
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 1.6e-17 93.2 112 49.1
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 2.1e-17 92.8 114 50.0
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 2.8e-17 92.4 111 47.7
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 3.6e-17 92.0 111 51.4
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 4.7e-17 91.7 111 53.2
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 6.2e-17 91.3 109 48.6
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 6.2e-17 91.3 117 47.0
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 6.2e-17 91.3 111 47.7
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 6.2e-17 91.3 110 49.1
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 1.1e-16 90.5 109 48.6
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 1.1e-16 90.5 112 49.1
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 1.8e-16 89.7 115 46.1
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 2.3e-16 89.4 113 49.6
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.1e-16 89.0 117 46.2
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 6.8e-16 87.8 110 52.7
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 8.9e-16 87.4 117 46.2
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 8.9e-16 87.4 112 48.2
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 2.0e-15 86.3 114 44.7
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 3.4e-15 85.5 114 47.4
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 4.4e-15 85.1 111 45.0
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 4.4e-15 85.1 111 46.8
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 4.4e-15 85.1 111 46.8
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 3.7e-14 82.0 113 44.2
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 4.9e-14 81.6 120 41.7
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 4.9e-14 81.6 113 43.4
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 6.4e-14 81.3 113 45.1
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 6.4e-14 81.3 111 45.9
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 8.4e-14 80.9 111 45.0
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 8.4e-14 80.9 112 42.9
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 8.4e-14 80.9 112 42.9
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 8.4e-14 80.9 112 42.9
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 1.4e-13 80.1 110 44.5
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 1.4e-13 80.1 111 45.0
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 7.1e-13 77.8 112 42.9
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 7.1e-13 77.8 118 41.5
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 9.2e-13 77.4 114 43.9
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 9.2e-13 77.4 114 43.9
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 1.6e-12 76.6 114 43.9
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 1.6e-12 76.6 110 41.8
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 2.1e-12 76.3 117 42.7
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 3.5e-12 75.5 110 42.7
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 4.6e-12 75.1 114 43.0
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 6.0e-12 74.7 101 50.5
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 1.0e-11 73.9 110 43.6
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 1.3e-11 73.6 111 40.5
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 1.7e-11 73.2 112 39.3
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 3.9e-11 72.0 115 41.7
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 5.1e-11 71.6 112 41.1
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 6.6e-11 71.2 101 48.5
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 6.6e-11 71.2 101 48.5
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 1.5e-10 70.1 112 38.4
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 3.3e-10 68.9 111 41.4
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 3.3e-10 68.9 115 36.5
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 3.3e-10 68.9 109 41.3
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 4.3e-10 68.6 131 38.2
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 4.3e-10 68.6 111 41.4
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 5.6e-10 68.2 111 44.1
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 1.2e-09 67.0 115 38.3
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 2.1e-09 66.2 115 35.7
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 2.8e-09 65.9 110 34.5
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 3.6e-09 65.5 114 36.8
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 4.7e-09 65.1 112 34.8
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 8.1e-09 64.3 112 37.5
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.1e-08 63.9 113 39.8
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 1.4e-08 63.5 112 42.9
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 2.4e-08 62.8 115 39.1
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 4.0e-08 62.0 113 38.9
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 5.2e-08 61.6 115 35.7
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 6.8e-08 61.2 107 39.3
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.2e-07 60.5 116 38.8
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 1.2e-07 60.5 110 37.3
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 2.9e-06 55.8 119 34.5
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 6.4e-06 54.7 72 37.5
TPR.G2798 Trifolium pratense HOM05D005193 ORTHO05D006316 6.4e-06 54.7 74 48.6


User provided reference genes

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