Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 2.0e-231 805.4 410 100.0
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 5.0e-142 508.4 402 65.7
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 2.7e-140 502.7 400 64.5
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 5.1e-139 498.4 403 64.8
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 1.5e-138 496.9 405 61.2
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 3.3e-138 495.7 406 64.0
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 1.7e-137 493.4 406 63.1
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 2.2e-137 493.0 405 63.5
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 2.4e-136 489.6 404 61.1
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.5e-135 485.3 401 62.1
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 4.5e-135 485.3 398 62.3
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.0e-134 484.2 401 61.8
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.1e-133 480.7 400 62.5
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 2.7e-132 476.1 408 60.8
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 5.1e-131 471.9 396 61.6
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 8.8e-131 471.1 402 60.2
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 3.3e-130 469.2 408 59.1
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 5.7e-130 468.4 399 59.4
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.8e-129 466.1 408 60.3
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 2.0e-127 459.9 407 56.8
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 7.7e-127 458.0 398 59.0
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 1.0e-126 457.6 404 57.9
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 3.8e-126 455.7 407 59.5
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 1.1e-125 454.1 410 58.0
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 1.9e-125 453.4 405 58.3
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 5.5e-125 451.8 403 58.8
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 9.4e-125 451.1 407 57.7
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 2.1e-124 449.9 399 58.1
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 4.7e-124 448.7 403 56.8
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 1.0e-123 447.6 403 57.8
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.8e-123 446.8 411 57.9
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 3.0e-123 446.0 399 57.6
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 2.0e-122 443.4 402 56.7
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 5.7e-122 441.8 401 58.6
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 1.3e-121 440.7 408 55.4
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 1.7e-121 440.3 402 57.0
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 1.7e-121 440.3 406 57.4
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 1.7e-121 440.3 357 63.3
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 2.2e-121 439.9 411 56.7
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 3.7e-121 439.1 403 56.6
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 4.8e-121 438.7 409 56.5
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 4.8e-121 438.7 402 55.5
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 1.4e-120 437.2 403 57.6
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 1.4e-120 437.2 402 56.0
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 2.4e-120 436.4 404 56.4
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 4.1e-120 435.6 401 57.1
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 4.1e-120 435.6 405 56.0
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 4.1e-120 435.6 401 55.9
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 7.0e-120 434.9 402 57.2
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 7.0e-120 434.9 402 55.5
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 1.2e-119 434.1 402 55.7
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 2.0e-119 433.3 406 55.4
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 2.6e-119 433.0 402 55.5
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 4.5e-119 432.2 400 54.5
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 5.9e-119 431.8 402 57.2
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 5.9e-119 431.8 403 55.8
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 7.7e-119 431.4 410 54.6
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 1.3e-118 430.6 402 54.7
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 5.0e-118 428.7 406 55.7
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.9e-117 426.8 406 55.4
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 2.5e-117 426.4 398 55.0
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 1.2e-116 424.1 395 55.9
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 1.6e-116 423.7 404 55.0
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 1.4e-115 420.6 406 54.9
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 5.2e-115 418.7 373 58.4
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 9.8e-114 414.5 420 53.3
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 3.1e-112 409.5 399 53.4
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 9.1e-112 407.9 367 56.7
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 2.2e-110 403.3 398 52.8
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 3.8e-110 402.5 354 59.3
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 5.0e-110 402.1 326 62.6
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 6.5e-110 401.7 381 54.6
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 8.5e-110 401.4 346 56.9
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 6.1e-108 395.2 394 53.0
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 8.0e-108 394.8 408 52.2
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 3.7e-105 386.0 405 52.6
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.2e-103 380.9 396 53.8
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 2.7e-103 379.8 401 52.6
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 5.9e-103 378.6 330 61.8
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 7.7e-103 378.3 404 50.5
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 8.9e-99 364.8 430 47.2
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 2.4e-96 356.7 328 57.6
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 9.2e-96 354.8 324 56.5
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 1.1e-93 347.8 388 49.2
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 3.4e-90 336.3 307 58.6
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 1.7e-89 334.0 276 61.2
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 1.3e-86 324.3 304 54.6
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 3.6e-84 316.2 300 54.7
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 3.0e-78 296.6 302 52.6
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 6.6e-78 295.4 247 60.7
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 4.3e-77 292.7 293 49.8
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 5.6e-77 292.4 278 55.8
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 2.1e-76 290.4 394 43.9
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 2.1e-71 273.9 382 41.6
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 7.3e-61 238.8 215 54.4
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 2.6e-58 230.3 240 54.2
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 2.9e-57 226.9 245 50.2
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 2.2e-49 200.7 224 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-44 184.5 284 38.4
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 4.8e-44 183.0 372 34.7
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 4.5e-42 176.4 210 45.7
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 7.6e-42 175.6 295 38.3
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 1.9e-40 171.0 352 34.1
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 1.1e-35 155.2 246 39.8
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.1e-29 135.2 99 71.7
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 8.5e-25 119.0 132 47.7
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 2.5e-21 107.5 92 55.4
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 2.8e-12 77.4 111 40.5
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 2.2e-09 67.8 94 39.4
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 6.5e-09 66.2 100 36.0
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 2.5e-08 64.3 82 35.4
MELO3C022571.2 Cucumis melo HOM05D016993 ORTHO05D019020 3.2e-08 63.9 58 56.9
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 6.1e-07 59.7 58 55.2
MELO3C025412.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.0e-06 58.9 49 61.2
MELO3C029511.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.0e-06 58.9 49 61.2
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 1.4e-06 58.5 61 47.5


User provided reference genes

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