Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.5e-65 252.7 128 100.0
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 4.0e-21 105.1 128 50.0
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.2e-21 104.8 134 48.5
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.7e-19 99.8 130 45.4
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.7e-19 99.8 137 46.0
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.7e-19 99.8 128 47.7
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.2e-19 99.4 125 48.0
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.8e-19 99.0 132 46.2
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 8.2e-19 97.4 144 45.1
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 3.1e-18 95.5 128 46.9
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 3.1e-18 95.5 128 44.5
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 4.1e-18 95.1 138 41.3
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.6e-17 93.2 131 45.8
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.6e-17 93.2 129 48.1
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.0e-17 92.8 131 45.0
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.0e-17 92.8 131 45.0
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 2.6e-17 92.4 128 47.7
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 1.0e-16 90.5 134 41.0
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.7e-16 89.7 134 44.0
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 1.7e-16 89.7 130 42.3
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 1.1e-15 87.0 147 40.1
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 1.1e-15 87.0 126 41.3
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 1.9e-15 86.3 144 40.3
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 4.2e-15 85.1 135 44.4
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 1.2e-14 83.6 128 45.3
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.2e-14 83.6 132 44.7
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.6e-14 83.2 127 37.8
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.6e-14 83.2 121 47.1
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.1e-14 82.8 130 42.3
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 2.7e-14 82.4 130 37.7
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 2.7e-14 82.4 129 43.4
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.6e-14 82.0 131 44.3
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 3.6e-14 82.0 127 39.4
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 8.0e-14 80.9 142 42.3
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 8.0e-14 80.9 132 37.9
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 1.4e-13 80.1 130 40.8
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.4e-13 80.1 142 42.3
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.4e-13 80.1 127 44.9
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.8e-13 79.7 128 39.8
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.3e-13 79.3 131 42.7
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 3.0e-13 79.0 130 39.2
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 3.0e-13 79.0 133 40.6
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 3.0e-13 79.0 133 40.6
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 3.0e-13 79.0 127 40.9
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 4.0e-13 78.6 131 40.5
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 4.0e-13 78.6 133 42.9
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.2e-13 78.2 142 41.5
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.2e-13 78.2 142 41.5
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 8.8e-13 77.4 127 39.4
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 1.5e-12 76.6 124 44.4
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.5e-12 76.6 136 42.6
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.5e-12 76.6 128 39.1
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 2.6e-12 75.9 120 43.3
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.6e-12 75.9 132 40.9
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 3.4e-12 75.5 126 38.1
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.4e-12 75.1 122 42.6
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 4.4e-12 75.1 126 38.9
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 4.4e-12 75.1 125 41.6
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.7e-12 74.7 143 40.6
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 5.7e-12 74.7 125 37.6
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 7.5e-12 74.3 129 37.2
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 7.5e-12 74.3 130 43.1
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 7.5e-12 74.3 129 39.5
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 9.8e-12 73.9 133 42.1
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.3e-11 73.6 133 39.1
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 2.8e-11 72.4 136 38.2
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.8e-11 72.4 124 41.9
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.8e-11 71.6 132 35.6
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.8e-11 71.6 130 37.7
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 4.8e-11 71.6 130 36.2
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 6.3e-11 71.2 125 38.4
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 6.3e-11 71.2 128 40.6
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 8.3e-11 70.9 128 41.4
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 8.3e-11 70.9 128 41.4
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 1.8e-10 69.7 125 36.0
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.8e-10 69.7 132 34.1
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 3.1e-10 68.9 128 40.6
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 3.1e-10 68.9 130 38.5
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 4.1e-10 68.6 128 42.2
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 4.1e-10 68.6 139 38.1
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 5.4e-10 68.2 130 38.5
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 9.1e-10 67.4 126 34.9
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 9.1e-10 67.4 129 39.5
AUR62015774 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.2e-09 67.0 127 37.8
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.2e-09 67.0 137 38.7
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 1.2e-09 67.0 139 36.0
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.6e-09 66.6 129 38.0
AUR62020444 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.6e-09 66.6 127 38.6
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 1.6e-09 66.6 128 39.8
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 2.0e-09 66.2 137 36.5
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.0e-09 66.2 126 34.1
BcaB06g26099 Brassica carinata HOM05D010457 ORTHO05D002434 2.7e-09 65.9 133 33.8
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 2.7e-09 65.9 131 38.9
MD10G1320500 Malus domestica HOM05D003074 ORTHO05D002434 3.5e-09 65.5 143 36.4
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.5e-09 65.1 128 34.4
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 5.9e-09 64.7 127 36.2
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 5.9e-09 64.7 130 33.8
BcaC05g28318 Brassica carinata HOM05D010457 ORTHO05D002434 7.7e-09 64.3 137 32.1
C05p44000 Brassica napus HOM05D010457 ORTHO05D002434 7.7e-09 64.3 137 32.1
BolC5t33118H Brassica oleracea HOM05D010457 ORTHO05D002434 7.7e-09 64.3 137 32.1
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 7.7e-09 64.3 131 36.6
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.7e-09 64.3 131 38.9
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.7e-09 64.3 128 39.8
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 1.0e-08 63.9 148 35.1
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.0e-08 63.9 127 36.2
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 1.0e-08 63.9 136 36.0
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.0e-08 63.9 136 36.0
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.7e-08 63.2 93 48.4
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 1.7e-08 63.2 129 38.0
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 1.7e-08 63.2 62 56.5
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.7e-08 63.2 117 41.0
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.2e-08 62.8 128 35.9
BraA05t21736Z Brassica rapa HOM05D010457 ORTHO05D002434 2.2e-08 62.8 133 30.8
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.2e-08 62.8 90 44.4
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.2e-08 62.8 131 34.4
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.2e-08 62.8 111 38.7
Carub.0003s2029 Capsella rubella HOM05D010457 ORTHO05D002434 2.9e-08 62.4 127 31.5
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.9e-08 62.4 88 46.6
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 2.9e-08 62.4 127 31.5
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 2.9e-08 62.4 131 33.6
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 2.9e-08 62.4 127 37.8
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 3.8e-08 62.0 126 37.3
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 3.8e-08 62.0 135 34.1
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 5.0e-08 61.6 138 37.0
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 5.0e-08 61.6 80 51.2
Glyma.17G014400 Glycine max HOM05D008677 ORTHO05D002434 6.5e-08 61.2 131 35.9
Solyc12g005000.1 Solanum lycopersicum HOM05D003074 ORTHO05D002434 6.5e-08 61.2 126 34.9
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 8.5e-08 60.8 129 35.7
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.1e-07 60.5 132 34.8
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.1e-07 60.5 134 37.3
A05p28590 Brassica napus HOM05D010457 ORTHO05D002434 1.5e-07 60.1 133 30.1
Glyma.17G014100 Glycine max HOM05D008677 ORTHO05D002434 1.5e-07 60.1 134 32.8
MD05G1345200 Malus domestica HOM05D003074 ORTHO05D002434 1.5e-07 60.1 143 35.7
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.9e-07 59.7 58 56.9
Migut.H01829 Erythranthe guttata HOM05D003074 ORTHO05D002434 1.9e-07 59.7 133 32.3
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.9e-07 59.7 128 38.3
Aa31LG8G7150 Aethionema arabicum HOM05D010457 ORTHO05D002434 2.5e-07 59.3 130 33.8
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.5e-07 59.3 59 55.9
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 4.2e-07 58.5 81 48.1
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 5.5e-07 58.2 64 50.0
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 5.5e-07 58.2 140 33.6
Zm00001eb151010 Zea mays HOM05D016178 ORTHO05D020926 5.5e-07 58.2 129 34.9
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 9.4e-07 57.4 129 37.2
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 9.4e-07 57.4 132 32.6
VMungo1215G0276 Vigna mungo HOM05D008677 ORTHO05D002434 9.4e-07 57.4 132 33.3
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.2e-06 57.0 138 31.2
FAN26G1625 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.2e-06 57.0 136 33.8
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 1.2e-06 57.0 125 35.2
BcaB04g20658 Brassica carinata HOM05D010457 ORTHO05D002434 1.6e-06 56.6 128 28.1
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 1.6e-06 56.6 126 34.9
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 1.6e-06 56.6 59 52.5
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.7e-06 55.8 142 34.5
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.7e-06 55.8 127 36.2
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.7e-06 55.8 58 53.4
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 2.7e-06 55.8 59 50.8
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 3.6e-06 55.5 128 34.4
FAN08G3684 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.6e-06 55.5 136 33.8
FAN25G1645 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.6e-06 55.5 136 33.8
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 3.6e-06 55.5 129 30.2
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.6e-06 55.5 114 36.8
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.7e-06 55.1 130 35.4
Glyma.07G259800 Glycine max HOM05D008677 ORTHO05D002434 4.7e-06 55.1 128 33.6
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.7e-06 55.1 129 31.8
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.7e-06 55.1 129 31.8
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 4.7e-06 55.1 131 34.4
RcHm_v2.0_Chr5g0003291 Rosa chinensis HOM05D003074 ORTHO05D002434 4.7e-06 55.1 64 51.6
FAN01G1682 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.1e-06 54.7 136 33.8
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.1e-06 54.7 132 38.6
Lj4g0005888 Lotus japonicus HOM05D008677 ORTHO05D002434 6.1e-06 54.7 142 28.2
Lalb_Chr07g0177271 Lupinus albus HOM05D008677 ORTHO05D002434 6.1e-06 54.7 144 34.0
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 8.0e-06 54.3 126 31.0
MSTRG.12971 Avicennia marina HOM05D003074 ORTHO05D002434 8.0e-06 54.3 126 36.5
Phvul.003G077900 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 8.0e-06 54.3 130 32.3
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 8.0e-06 54.3 133 31.6
PGSC0003DMG400005078 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.0e-06 54.3 66 51.5
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 8.0e-06 54.3 56 55.4


User provided reference genes

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