Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03434 Eucalyptus grandis HOM05D006334 ORTHO05D008320 7.0e-101 371.3 302 100.0
CiPaw.12G127100 Carya illinoinensis HOM05D006334 ORTHO05D008320 3.8e-83 312.4 302 75.8
Prupe.4G205200 Prunus persica HOM05D006334 ORTHO05D008320 2.1e-81 306.6 302 76.8
Potri.001G418900 Populus trichocarpa HOM05D006334 ORTHO05D008320 3.0e-80 302.8 300 61.7
TWI38G1766 Tripterygium wilfordii HOM05D006334 ORTHO05D008320 1.5e-79 300.4 300 78.0
QL08p012879 Quercus lobata HOM05D006334 ORTHO05D008320 8.3e-78 294.7 301 78.7
Haze_09629 Corylus avellana HOM05D006334 ORTHO05D008320 7.0e-77 291.6 302 72.2
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 2.0e-76 290.0 300 74.0
Lsat_1_v5_gn_7_109541 Lactuca sativa HOM05D006334 ORTHO05D008320 2.0e-76 290.0 300 71.7
FvH4_3g21950 Fragaria vesca HOM05D006334 ORTHO05D008320 5.0e-75 285.4 302 64.6
FAN11G3716 Fragaria x ananassa HOM05D006334 ORTHO05D008320 5.0e-75 285.4 302 65.9
vmacro09744 Vaccinium macrocarpon HOM05D006334 ORTHO05D008320 1.1e-74 284.3 299 74.9
Lj3g0002745 Lotus japonicus HOM05D006334 ORTHO05D008320 2.1e-73 280.0 302 81.1
COL.COLO4_09585 Corchorus olitorius HOM05D006334 ORTHO05D008320 2.8e-73 279.6 300 74.7
CSS0039549 Camellia sinensis var. sinensis HOM05D006334 ORTHO05D008320 6.2e-73 278.5 299 62.2
Manes.03G123900 Manihot esculenta HOM05D006334 ORTHO05D008320 8.0e-73 278.1 302 68.5
DCAR_022532 Daucus carota HOM05D006334 ORTHO05D008320 1.4e-72 277.3 297 60.9
ClCG05G014700 Citrullus lanatus HOM05D006334 ORTHO05D008320 1.8e-72 276.9 302 70.9
arahy.Tifrunner.gnm1.ann1.9AY9GA Arachis hypogaea HOM05D006334 ORTHO05D008320 2.3e-72 276.6 302 71.9
arahy.Tifrunner.gnm1.ann1.Q0MPW2 Arachis hypogaea HOM05D006334 ORTHO05D008320 2.3e-72 276.6 302 72.2
RcHm_v2.0_Chr5g0037801 Rosa chinensis HOM05D006334 ORTHO05D008320 1.2e-71 274.2 302 60.9
Phvul.005G092400 Phaseolus vulgaris HOM05D006334 ORTHO05D008320 2.0e-71 273.5 303 76.6
Duzib268G1565 Durio zibethinus HOM05D006334 ORTHO05D008320 2.6e-71 273.1 299 73.9
FAN25G1013 Fragaria x ananassa HOM05D006334 ORTHO05D008320 3.4e-71 272.7 298 66.1
Gohir.D01G062800 Gossypium hirsutum HOM05D006334 ORTHO05D008320 7.5e-71 271.6 300 72.3
Nitab4.5_0002229g0170 Nicotiana tabacum HOM05D006334 ORTHO05D008320 7.5e-71 271.6 300 71.3
GSVIVG01001978001 Vitis vinifera HOM05D006334 ORTHO05D008320 9.8e-71 271.2 302 69.5
Nitab4.5_0002342g0070 Nicotiana tabacum HOM05D006334 ORTHO05D008320 2.2e-70 270.0 300 71.0
MD11G1224700 Malus domestica HOM05D006334 ORTHO05D008320 2.9e-70 269.6 300 69.0
CAN.G1110.6 Capsicum annuum HOM05D006334 ORTHO05D008320 1.1e-69 267.7 300 72.3
MD03G1210000 Malus domestica HOM05D006334 ORTHO05D008320 2.4e-69 266.5 300 61.3
Dinv22296 Davidia involucrata HOM05D006334 ORTHO05D008320 5.4e-69 265.4 182 75.3
QL08p012752 Quercus lobata HOM05D006334 ORTHO05D008320 5.4e-69 265.4 188 82.4
Ciclev10009059m.g Citrus clementina HOM05D006334 ORTHO05D008320 7.0e-69 265.0 300 70.3
Gohir.A01G075500 Gossypium hirsutum HOM05D006334 ORTHO05D008320 1.2e-68 264.2 300 71.0
Lj8A166G85 Lonicera japonica HOM05D006334 ORTHO05D008320 3.5e-68 262.7 310 66.5
Thecc.07G050800 Theobroma cacao HOM05D006334 ORTHO05D008320 3.5e-68 262.7 300 72.3
RhsimUnG0252800 Rhododendron simsii HOM05D006334 ORTHO05D008320 1.0e-67 261.2 245 69.8
Gorai.002G083500 Gossypium raimondii HOM05D006334 ORTHO05D008320 1.7e-67 260.4 300 70.7
Psat5g251960 Pisum sativum HOM05D006334 ORTHO05D008320 3.0e-67 259.6 302 73.2
PGR031G1291 Punica granatum HOM05D006334 ORTHO05D008320 3.0e-67 259.6 306 79.4
Solyc10g006460.3 Solanum lycopersicum HOM05D006334 ORTHO05D008320 3.0e-67 259.6 191 78.5
AUR62020535 Chenopodium quinoa HOM05D006334 ORTHO05D008320 5.0e-67 258.8 298 61.4
Ca_01740_v3 Cicer arietinum L. HOM05D006334 ORTHO05D008320 8.6e-67 258.1 302 78.1
Nn1g07058 Nelumbo nucifera HOM05D006334 ORTHO05D008320 8.6e-67 258.1 302 73.5
VMungo1080G0184 Vigna mungo HOM05D006334 ORTHO05D008320 8.6e-67 258.1 302 79.1
Atru.chr2.3229 Acer truncatum HOM05D006334 ORTHO05D008320 1.5e-66 257.3 300 60.7
Sabra16G0284400 Salix brachista HOM05D006334 ORTHO05D008320 1.5e-66 257.3 300 60.0
Glyma.13G288200 Glycine max HOM05D006334 ORTHO05D008320 1.9e-66 256.9 302 81.5
Hund23297 Selenicereus undatus HOM05D006334 ORTHO05D008320 2.5e-66 256.5 298 66.4
Medtr2g083200 Medicago truncatula HOM05D006334 ORTHO05D008320 3.3e-66 256.1 302 74.8
Aqoxy1G03666 Aquilegia oxysepala HOM05D006334 ORTHO05D008320 4.3e-66 255.8 210 75.7
HanXRQChr11g0337741 Helianthus annuus HOM05D006334 ORTHO05D008320 5.6e-66 255.4 213 76.5
Sc07g0002760 Simmondsia chinensis HOM05D006334 ORTHO05D008320 5.6e-66 255.4 298 66.8
THA.LOC104812531 Tarenaya hassleriana HOM05D006334 ORTHO05D008320 5.6e-66 255.4 300 70.0
CDE05G3377 Ceratophyllum demersum HOM05D006334 ORTHO05D008320 1.6e-65 253.8 210 74.3
CsaV3_3G023200 Cucumis sativus L. HOM05D006334 ORTHO05D008320 2.1e-65 253.4 302 71.2
CsaV3_UNG104770 Cucumis sativus L. HOM05D006334 ORTHO05D008320 2.1e-65 253.4 302 71.2
Cc05_g13330 Coffea canephora HOM05D006334 ORTHO05D008320 2.8e-65 253.1 300 70.7
MELO3C018091.2 Cucumis melo HOM05D006334 ORTHO05D008320 4.7e-65 252.3 302 70.9
Aa31LG5G10300 Aethionema arabicum HOM05D006334 ORTHO05D008320 1.4e-64 250.8 304 69.1
PSO210G7302 Papaver somniferum HOM05D006334 ORTHO05D008320 1.8e-64 250.4 301 60.5
ECA236G0521 Erigeron canadensis HOM05D006334 ORTHO05D008320 2.3e-64 250.0 298 60.7
PGSC0003DMG400014399 Solanum tuberosum HOM05D006334 ORTHO05D008320 5.2e-64 248.8 139 88.5
AT4G27120 Arabidopsis thaliana HOM05D006334 ORTHO05D008320 8.9e-64 248.1 304 70.1
Sopen10g002410 Solanum pennellii HOM05D006334 ORTHO05D008320 3.4e-63 246.1 139 87.8
AL7G25680 Arabidopsis lyrata HOM05D006334 ORTHO05D008320 4.4e-63 245.7 304 63.5
Peaxi162Scf00407g00312 Petunia axillaris HOM05D006334 ORTHO05D008320 9.8e-63 244.6 141 85.8
TAR629G3436 Trochodendron aralioides HOM05D006334 ORTHO05D008320 1.7e-62 243.8 175 86.9
AUR62015668 Chenopodium quinoa HOM05D006334 ORTHO05D008320 2.2e-62 243.4 298 56.4
CARHR234770 Cardamine hirsuta HOM05D006334 ORTHO05D008320 3.7e-62 242.7 190 82.1
Os07g0103200 Oryza sativa ssp. japonica HOM05D006334 ORTHO05D008320 4.9e-62 242.3 201 75.6
Migut.M01801 Erythranthe guttata HOM05D006334 ORTHO05D008320 6.4e-62 241.9 298 70.1
Peaxi162Scf00450g00858 Petunia axillaris HOM05D006334 ORTHO05D008320 6.4e-62 241.9 189 78.8
PSO832G3755 Papaver somniferum HOM05D006334 ORTHO05D008320 8.3e-62 241.5 301 58.8
MBI02_g23962_MAGBIO Magnolia biondii HOM05D006334 ORTHO05D008320 1.1e-61 241.1 300 60.7
SGA_v2.0_scaffold101G29789 Striga asiatica HOM05D006334 ORTHO05D008320 1.1e-61 241.1 193 80.8
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 2.4e-61 240.0 301 52.2
TPR.G19971 Trifolium pratense HOM05D006334 ORTHO05D008320 3.2e-61 239.6 213 74.6
Zm00001eb298180 Zea mays HOM05D006334 ORTHO05D008320 7.1e-61 238.4 192 69.3
Ah.04g165560 Amaranthus hybridus HOM05D006334 ORTHO05D008320 9.2e-61 238.0 298 51.7
Glyma.12G213500 Glycine max HOM05D006334 ORTHO05D008320 4.6e-60 235.7 302 77.8
MSTRG.27096 Avicennia marina HOM05D006334 ORTHO05D008320 1.3e-59 234.2 193 79.3
Sp7g25090 Schrenkiella parvula HOM05D006334 ORTHO05D008320 3.0e-59 233.0 182 84.1
Lalb_Chr24g0400251 Lupinus albus HOM05D006334 ORTHO05D008320 5.1e-59 232.3 141 82.3
AUR62005409 Chenopodium quinoa HOM05D006334 ORTHO05D008320 6.6e-59 231.9 299 56.2
Thhalv10025846m.g Eutrema salsugineum HOM05D006334 ORTHO05D008320 6.6e-59 231.9 183 82.0
BcaNung03057 Brassica carinata HOM05D006334 ORTHO05D008320 2.5e-58 229.9 142 83.8
BraA01t01781Z Brassica rapa HOM05D006334 ORTHO05D008320 4.3e-58 229.2 142 83.8
unitig_748.g7233 Utricularia gibba HOM05D006334 ORTHO05D008320 1.6e-57 227.3 301 58.8
Carub.0007s1372 Capsella rubella HOM05D006334 ORTHO05D008320 2.8e-57 226.5 304 66.4
HPP92_014117 Vanilla planifolia HOM05D006334 ORTHO05D008320 2.8e-57 226.5 200 76.0
BolC1t02259H Brassica oleracea HOM05D006334 ORTHO05D008320 3.6e-57 226.1 142 83.1
C01p23260 Brassica napus HOM05D006334 ORTHO05D008320 1.1e-56 224.6 142 82.4
Sed0009538 Sechium edule HOM05D006334 ORTHO05D008320 1.8e-56 223.8 131 85.5
A03p57090 Brassica napus HOM05D006334 ORTHO05D008320 2.3e-56 223.4 144 81.9
BraA03t14779Z Brassica rapa HOM05D006334 ORTHO05D008320 2.3e-56 223.4 144 81.9
BcaC06g32710 Brassica carinata HOM05D006334 ORTHO05D008320 1.2e-55 221.1 143 81.1
C07p54970 Brassica napus HOM05D006334 ORTHO05D008320 1.2e-55 221.1 143 81.1
Carub.0008s0614 Capsella rubella HOM05D006334 ORTHO05D008320 2.0e-55 220.3 304 69.4
BolC7t46013H Brassica oleracea HOM05D006334 ORTHO05D001501 4.4e-55 219.2 135 83.0
Mapoly0114s0022 Marchantia polymorpha HOM05D006334 ORTHO05D008320 6.4e-54 215.3 193 71.0
A01p18260 Brassica napus HOM05D006334 ORTHO05D008320 8.4e-54 214.9 123 87.0
SEGI_34639 Sequoiadendron giganteum HOM05D006334 ORTHO05D008320 2.4e-53 213.4 179 74.9
EL10Ac4g07940 Beta vulgaris HOM05D006334 ORTHO05D008320 9.6e-50 201.4 311 57.9
Actinidia35324 Actinidia chinensis HOM05D006334 ORTHO05D008320 4.7e-49 199.1 106 90.6
FAN21G3458 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.1e-48 198.0 311 51.8
AagrBONN_evm.TU.Sc2ySwM_228.581 Anthoceros agrestis HOM05D006334 ORTHO05D008320 6.8e-48 195.3 194 67.5
AagrBONN_evm.TU.Sc2ySwM_368.826 Anthoceros agrestis HOM05D006334 ORTHO05D008320 3.4e-47 193.0 194 66.5
SMO143G0307 Selaginella moellendorffii HOM05D006334 ORTHO05D008320 7.6e-47 191.8 130 73.8
Pp3c20_19360 Physcomitrium patens HOM05D006334 ORTHO05D008320 1.7e-46 190.7 178 68.0
Actinidia10714 Actinidia chinensis HOM05D006334 ORTHO05D008320 1.1e-45 188.0 101 92.1
CBR_g8852 Chara braunii HOM05D006334 ORTHO05D008320 5.6e-42 175.6 195 57.4
Cpa.g.sc97.55 Carica papaya HOM05D006334 ORTHO05D008320 1.2e-31 141.4 115 87.0
Oeu032444.1 Olea europaea HOM05D006334 ORTHO05D008320 2.4e-29 133.7 77 79.2
ATR0697G296 Amborella trichopoda HOM05D006334 ORTHO05D008320 2.1e-28 130.6 224 50.0
Cre02.g101100 Chlamydomonas reinhardtii HOM05D006334 ORTHO05D008320 4.6e-28 129.4 119 53.8
FAN16G1435 Fragaria x ananassa HOM05D006334 ORTHO05D008320 2.8e-25 120.2 70 87.1
Cpa.g.sc97.53 Carica papaya HOM05D006334 ORTHO05D008320 3.7e-25 119.8 70 88.6
Haze_27349 Corylus avellana HOM05D006334 ORTHO05D008320 1.6e-20 104.4 181 44.2
FAN16G3226 Fragaria x ananassa HOM05D006334 ORTHO05D008320 6.0e-20 102.4 202 55.0
BcaC09g50615 Brassica carinata HOM05D006334 ORTHO05D008320 6.7e-19 99.0 60 80.0


User provided reference genes

Program Settings