Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 4.0e-73 278.1 150 100.0
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 8.7e-28 127.5 158 52.5
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 2.8e-26 122.5 149 51.0
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 1.1e-22 110.5 149 45.6
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 1.4e-22 110.2 147 46.9
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 1.0e-20 104.0 148 45.3
Peaxi162Scf00714g00432 Petunia axillaris HOM05D006536 ORTHO05D005877 3.9e-20 102.1 97 57.7
Nitab4.5_0003924g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 8.2e-18 94.4 139 43.9
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 2.6e-16 89.4 95 47.4
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 2.6e-16 89.4 156 41.0
Peaxi162Scf00714g00424 Petunia axillaris HOM05D006536 ORTHO05D005877 5.9e-16 88.2 150 44.0
Eucgr.F00976 Eucalyptus grandis HOM05D006536 ORTHO05D005877 7.6e-16 87.8 153 42.5
Sabra11G0120700 Salix brachista HOM05D006536 ORTHO05D005877 7.6e-16 87.8 143 37.1
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 1.3e-15 87.0 129 41.1
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 1.7e-15 86.7 162 40.7
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 8.5e-15 84.3 152 36.8
CAN.G981.16 Capsicum annuum HOM05D006536 ORTHO05D005877 1.1e-14 84.0 149 41.6
ClCG10G005660 Citrullus lanatus HOM05D006536 ORTHO05D005877 1.1e-14 84.0 112 43.8
Migut.H00699 Erythranthe guttata HOM05D006536 ORTHO05D005877 1.1e-14 84.0 146 37.7
Nitab4.5_0005213g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.1e-14 84.0 153 39.9
HanXRQChr11g0337791 Helianthus annuus HOM05D009374 ORTHO05D012864 1.4e-14 83.6 149 39.6
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 1.4e-14 83.6 150 36.7
MELO3C032238.2 Cucumis melo HOM05D006536 ORTHO05D005877 2.5e-14 82.8 92 44.6
CsaV3_3G005360 Cucumis sativus L. HOM05D006536 ORTHO05D005877 2.5e-14 82.8 92 45.7
Potri.011G134400 Populus trichocarpa HOM05D006536 ORTHO05D005877 2.5e-14 82.8 141 36.9
Potri.011G134500 Populus trichocarpa HOM05D006536 ORTHO05D005877 2.5e-14 82.8 141 36.9
MELO3C025418.2 Cucumis melo HOM05D006536 ORTHO05D005877 3.2e-14 82.4 150 38.7
Sopen08g028800 Solanum pennellii HOM05D006536 ORTHO05D005877 3.2e-14 82.4 108 42.6
HanXRQChr11g0332931 Helianthus annuus HOM05D009374 ORTHO05D012864 5.5e-14 81.6 162 39.5
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 7.2e-14 81.3 152 38.8
QL08p012979 Quercus lobata HOM05D006536 ORTHO05D005877 7.2e-14 81.3 141 39.0
Eucgr.F00977 Eucalyptus grandis HOM05D006536 ORTHO05D005877 1.6e-13 80.1 154 37.7
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.1e-13 79.7 152 37.5
Hma1.2p1_0745F.1_g212040 Hydrangea macrophylla HOM05D006536 ORTHO05D005877 3.6e-13 79.0 138 36.2
SHI31832 Sapria himalayana HOM05D006536 ORTHO05D005877 3.6e-13 79.0 139 33.1
Sabra02G0106400 Salix brachista HOM05D006536 ORTHO05D005877 4.6e-13 78.6 138 38.4
CDE05G1907 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 6.1e-13 78.2 147 36.1
QL08p013125 Quercus lobata HOM05D009374 ORTHO05D005877 6.1e-13 78.2 160 33.8
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 7.9e-13 77.8 151 41.1
Nitab4.5_0006023g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.4e-12 77.0 151 37.1
PGR083G2006 Punica granatum HOM05D006536 ORTHO05D005877 1.4e-12 77.0 154 33.8
ClCG10G005680 Citrullus lanatus HOM05D006536 ORTHO05D005877 2.3e-12 76.3 152 36.2
ECA236G4404 Erigeron canadensis HOM05D009374 ORTHO05D012864 2.3e-12 76.3 159 38.4
CAN.G981.17 Capsicum annuum HOM05D006536 ORTHO05D005877 3.0e-12 75.9 149 39.6
Manes.03G123318 Manihot esculenta HOM05D006536 ORTHO05D005877 3.0e-12 75.9 137 34.3
Nn1g07017 Nelumbo nucifera HOM05D023228 ORTHO05D005877 5.1e-12 75.1 147 41.5
CDE11G0063 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 6.7e-12 74.7 142 34.5
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 6.7e-12 74.7 150 35.3
Nn1g07021 Nelumbo nucifera HOM05D023228 ORTHO05D005877 8.8e-12 74.3 136 39.7
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 8.8e-12 74.3 152 35.5
Lsat_1_v5_gn_7_106501 Lactuca sativa HOM05D009374 ORTHO05D012864 1.1e-11 73.9 154 37.0
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 1.1e-11 73.9 153 36.6
PSO478G5239 Papaver somniferum HOM05D006536 ORTHO05D005877 1.5e-11 73.6 156 34.6
PSO541G3913 Papaver somniferum HOM05D006536 ORTHO05D005877 1.5e-11 73.6 154 33.8
CDE11G0553 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.9e-11 73.2 146 33.6
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 1.9e-11 73.2 125 38.4
PSO675G9181 Papaver somniferum HOM05D006536 ORTHO05D005877 1.9e-11 73.2 152 34.9
DCAR_022529 Daucus carota HOM05D006536 ORTHO05D005877 2.5e-11 72.8 107 37.4
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 4.3e-11 72.0 107 36.4
Nitab4.5_0001479g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 7.4e-11 71.2 152 34.9
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 7.4e-11 71.2 155 32.9
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 9.7e-11 70.9 147 37.4
Nn1g07020 Nelumbo nucifera HOM05D023228 ORTHO05D005877 9.7e-11 70.9 147 38.1
PSO541G4685 Papaver somniferum HOM05D006536 ORTHO05D005877 9.7e-11 70.9 155 33.5
SalBow3G0084 Salvia bowleyana HOM05D003262 ORTHO05D003608 9.7e-11 70.9 161 37.3
SHI26644 Sapria himalayana HOM05D006536 ORTHO05D005877 9.7e-11 70.9 149 30.9
CAN.G981.18 Capsicum annuum HOM05D006536 ORTHO05D005877 1.3e-10 70.5 141 34.0
Dinv40717 Davidia involucrata HOM05D006536 ORTHO05D005877 1.7e-10 70.1 121 39.7
Solyc08g080490.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 2.2e-10 69.7 146 34.9
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 2.8e-10 69.3 149 37.6
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 2.8e-10 69.3 153 35.3
PSO541G5532 Papaver somniferum HOM05D006536 ORTHO05D005877 3.7e-10 68.9 155 34.8
unitig_8.g4307 Utricularia gibba HOM05D006536 ORTHO05D005877 3.7e-10 68.9 148 33.8
Nitab4.5_0004487g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.8e-10 68.6 107 37.4
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 4.8e-10 68.6 155 34.8
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 4.8e-10 68.6 123 35.0
Cpa.g.sc2.108 Carica papaya HOM05D020248 ORTHO05D022235 6.3e-10 68.2 94 38.3
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 6.3e-10 68.2 146 34.2
ECA236G3141 Erigeron canadensis HOM05D009374 ORTHO05D012864 8.2e-10 67.8 170 35.9
Migut.J01035 Erythranthe guttata HOM05D006536 ORTHO05D005877 8.2e-10 67.8 152 38.8
Nitab4.5_0008018g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.8e-09 66.6 106 37.7
SGA_v2.0_scaffold20G09060 Striga asiatica HOM05D006536 ORTHO05D005877 1.8e-09 66.6 98 34.7
HanXRQChr13g0408641 Helianthus annuus HOM05D009374 ORTHO05D005877 2.4e-09 66.2 156 34.0
HanXRQChr15g0493431 Helianthus annuus HOM05D009374 ORTHO05D012864 3.1e-09 65.9 155 31.0
SHI26633 Sapria himalayana HOM05D006536 ORTHO05D005877 3.1e-09 65.9 148 32.4
ECA236G0204 Erigeron canadensis HOM05D009374 ORTHO05D012864 4.1e-09 65.5 162 34.0
ATR0686G133 Amborella trichopoda HOM05D031825 ORTHO05D005877 5.3e-09 65.1 143 32.2
unitig_744.g24698 Utricularia gibba HOM05D009374 ORTHO05D005877 5.3e-09 65.1 148 29.1
Gohir.A01G075200 Gossypium hirsutum HOM05D015826 ORTHO05D005877 6.9e-09 64.7 150 35.3
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.1e-09 64.3 170 34.7
AUR62020540 Chenopodium quinoa HOM05D009374 ORTHO05D005877 1.2e-08 63.9 140 35.7
Gohir.D01G062500 Gossypium hirsutum HOM05D015826 ORTHO05D005877 1.2e-08 63.9 150 35.3
Migut.J01038 Erythranthe guttata HOM05D006536 ORTHO05D005877 2.0e-08 63.2 155 35.5
SHI26638 Sapria himalayana HOM05D006536 ORTHO05D005877 2.0e-08 63.2 146 31.5
Nitab4.5_0001479g0060 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.6e-08 62.8 152 32.2
TWI39G0888 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 2.6e-08 62.8 145 33.8
Nitab4.5_0001479g0070 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.4e-08 62.4 139 35.3
PGR083G1686 Punica granatum HOM05D006536 ORTHO05D005877 4.5e-08 62.0 164 36.0
Gorai.002G083200 Gossypium raimondii HOM05D015826 ORTHO05D005877 5.9e-08 61.6 150 34.7
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.9e-08 61.6 163 31.9
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 5.9e-08 61.6 159 34.0
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 5.9e-08 61.6 152 34.2
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 7.7e-08 61.2 175 30.9
Migut.J01041 Erythranthe guttata HOM05D006536 ORTHO05D005877 7.7e-08 61.2 152 36.2
PGR083G0669 Punica granatum HOM05D006536 ORTHO05D005877 1.0e-07 60.8 162 35.8
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.0e-07 60.8 164 32.9
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.0e-07 60.8 164 32.9
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.0e-07 60.8 164 32.9
PSO782G1199 Papaver somniferum HOM05D006536 ORTHO05D005877 1.3e-07 60.5 60 40.0
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.3e-07 60.5 167 31.7
COL.COLO4_27651 Corchorus olitorius HOM05D020248 ORTHO05D022235 2.2e-07 59.7 108 32.4
QL08p013066 Quercus lobata HOM05D006536 ORTHO05D005877 2.2e-07 59.7 149 34.2
Solyc07g064210.2 Solanum lycopersicum HOM05D006536 ORTHO05D005877 2.2e-07 59.7 153 33.3
ClCG09G018590 Citrullus lanatus HOM05D006536 ORTHO05D005877 3.8e-07 58.9 102 31.4
MBI18_g21250_MAGBIO Magnolia biondii HOM05D006536 ORTHO05D005877 3.8e-07 58.9 118 36.4
SGA_v2.0_scaffold75G24748 Striga asiatica HOM05D006536 ORTHO05D005877 3.8e-07 58.9 152 30.9
AUR62015663 Chenopodium quinoa HOM05D009374 ORTHO05D005877 5.0e-07 58.5 141 32.6
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 5.0e-07 58.5 143 30.8
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 5.0e-07 58.5 161 33.5
Sopen07g032350 Solanum pennellii HOM05D006536 ORTHO05D005877 5.0e-07 58.5 105 36.2
Lsat_1_v5_gn_7_93341 Lactuca sativa HOM05D009374 ORTHO05D012864 6.5e-07 58.2 155 31.0
Lsat_1_v5_gn_7_93361 Lactuca sativa HOM05D009374 ORTHO05D012864 6.5e-07 58.2 155 31.0
Lsat_1_v5_gn_7_93381 Lactuca sativa HOM05D009374 ORTHO05D012864 6.5e-07 58.2 155 31.0
Lsat_1_v5_gn_7_93441 Lactuca sativa HOM05D009374 ORTHO05D012864 6.5e-07 58.2 155 31.0
Lsat_1_v5_gn_7_93500 Lactuca sativa HOM05D009374 ORTHO05D012864 6.5e-07 58.2 155 31.0
Lsat_1_v5_gn_7_93520 Lactuca sativa HOM05D009374 ORTHO05D012864 6.5e-07 58.2 155 31.0
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 6.5e-07 58.2 153 30.7
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 6.5e-07 58.2 157 31.2
PSO017G6165 Papaver somniferum HOM05D006536 ORTHO05D005877 1.1e-06 57.4 91 35.2
PSO541G2788 Papaver somniferum HOM05D006536 ORTHO05D005877 1.1e-06 57.4 149 33.6
Ah.06g183000 Amaranthus hybridus HOM05D001264 ORTHO05D001167 1.4e-06 57.0 137 30.7
Lsat_1_v5_gn_7_108020 Lactuca sativa HOM05D006536 ORTHO05D005877 1.9e-06 56.6 98 30.6
GSVIVG01001973001 Vitis vinifera HOM05D006536 ORTHO05D005877 1.9e-06 56.6 121 38.0
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 2.5e-06 56.2 151 33.8
Duzib248G1413 Durio zibethinus HOM05D020248 ORTHO05D022235 2.5e-06 56.2 64 43.8
EL10Ac4g07942 Beta vulgaris HOM05D009374 ORTHO05D005877 3.2e-06 55.8 148 28.4
Migut.J01036 Erythranthe guttata HOM05D006536 ORTHO05D005877 3.2e-06 55.8 109 34.9
Hma1.2p1_0533F.1_g173670 Hydrangea macrophylla HOM05D006536 ORTHO05D005877 3.2e-06 55.8 61 42.6
Nn1g07014 Nelumbo nucifera HOM05D023228 ORTHO05D005877 3.2e-06 55.8 67 40.3
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.2e-06 55.8 67 40.3
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.2e-06 55.8 163 31.3
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.2e-06 55.8 163 31.3
CANSAT54G1080 Cannabis sativa HOM05D006536 ORTHO05D005877 5.5e-06 55.1 148 30.4
ECA248G3520 Erigeron canadensis HOM05D009374 ORTHO05D012864 5.5e-06 55.1 104 32.7
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 7.2e-06 54.7 150 33.3
Manes.03G123600 Manihot esculenta HOM05D006536 ORTHO05D005877 7.2e-06 54.7 147 30.6
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 9.4e-06 54.3 160 31.2


User provided reference genes

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