Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2543.1 1259 100.0
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 2069.7 1262 81.9
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2067.0 1260 80.6
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2060.8 1261 80.6
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2052.7 1267 80.0
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2045.8 1262 79.9
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2040.8 1265 80.2
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2035.0 1263 80.0
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2033.1 1264 79.8
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2031.9 1262 80.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2031.5 1261 79.2
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2031.5 1261 79.5
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2031.5 1261 79.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2031.1 1261 79.1
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2031.1 1263 80.2
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2027.7 1261 79.0
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2027.7 1262 78.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2006.1 1260 78.2
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2005.3 1267 78.4
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2001.5 1262 78.5
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2001.5 1279 78.0
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1995.7 1262 78.4
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1988.4 1262 77.9
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1263 77.4
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1986.5 1262 76.9
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1984.9 1261 77.6
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1981.8 1301 75.6
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1980.3 1256 77.5
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1979.9 1262 77.7
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1979.5 1262 77.7
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1977.6 1262 77.6
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1952.2 1260 76.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1947.2 1265 75.8
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1944.9 1265 75.7
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1944.1 1263 76.2
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1941.0 1259 76.3
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1284 74.8
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1936.4 1260 75.2
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1935.6 1258 75.9
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1935.2 1252 77.9
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1258 75.6
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1931.0 1262 76.3
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1931.0 1520 67.0
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1930.6 1258 76.4
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1930.2 1260 75.4
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1929.1 1260 75.2
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1929.1 1329 73.0
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1261 75.3
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1923.3 1263 75.0
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1921.7 1258 75.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1915.6 1258 74.6
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1911.3 1274 74.7
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1259 75.0
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1909.4 1292 73.1
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1907.9 1262 74.4
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1905.6 1260 74.4
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1904.0 1260 74.3
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1903.3 1262 74.4
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1901.3 1261 74.4
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1900.9 1262 74.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1900.9 1262 74.2
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1898.6 1284 73.3
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1898.6 1266 74.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1895.9 1263 73.6
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1887.5 1271 74.0
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1886.3 1271 73.0
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1883.6 1245 74.2
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1882.8 1261 73.5
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1881.3 1263 74.6
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1880.1 1266 74.2
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1880.1 1262 73.6
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1879.4 1259 73.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1878.6 1262 73.6
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1259 73.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1874.4 1263 73.8
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1263 73.6
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1873.6 1265 73.8
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1871.7 1260 73.0
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1871.3 1261 73.5
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1258 74.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1869.7 1260 73.2
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1869.0 1258 73.8
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1865.5 1265 73.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1865.1 1272 72.1
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1839.3 1273 73.6
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1827.0 1249 73.2
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1823.1 1166 76.5
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1788.1 1240 71.8
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1779.6 1328 67.6
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1774.6 1161 74.8
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1772.3 1263 68.6
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1738.0 1257 69.1
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1660.6 1074 75.8
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1609.0 1100 73.0
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1608.6 1239 64.9
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1607.8 1036 76.9
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1585.5 1047 75.6
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1575.8 1009 77.7
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1568.9 1268 62.5
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1545.0 1062 73.2
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1530.8 1032 73.2
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1468.8 1121 67.8
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1452.6 1016 72.1
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1452.6 928 78.6
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1417.5 856 80.8
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1300.8 1391 50.1
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1226.8 1359 48.8
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1204.5 1265 53.0
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1157.5 778 73.5
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1136.7 747 73.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1091.3 867 64.6
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.1e-296 1023.8 1016 55.9
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.6e-292 1010.0 1155 47.4
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 4.1e-272 942.2 592 79.1
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.8e-257 892.5 536 80.6
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-246 857.4 849 55.2
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.2e-215 754.6 1436 34.5
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-204 718.0 446 78.5
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 4.0e-182 643.3 454 71.4
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.0e-161 573.9 489 60.7
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 4.7e-159 566.6 306 87.9
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.3e-120 437.6 316 68.7
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 2.0e-101 375.2 205 85.4
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-94 351.7 194 82.5
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.0e-92 346.3 316 59.2
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.4e-91 342.4 372 48.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.7e-87 327.8 260 62.3
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 3.2e-83 314.7 172 85.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.8e-79 301.6 212 72.6
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.8e-78 298.9 159 89.9
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 7.7e-77 293.5 208 72.1
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.1e-70 273.1 152 85.5
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-69 269.2 257 56.4
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-69 269.2 257 56.4
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-69 269.2 257 56.4
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 5.9e-69 267.3 181 66.9
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.9e-67 262.3 263 52.1
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 6.8e-65 253.8 199 63.3
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-63 249.6 452 34.5
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 4.2e-59 234.6 149 75.8
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.6e-56 225.3 164 69.5
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.9e-51 209.1 138 73.2
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.7e-50 204.5 152 67.1
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.6e-48 198.7 204 52.5
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.9e-47 195.3 133 68.4
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.8e-45 187.2 110 80.0
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.5e-43 182.2 110 77.3
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.7e-42 177.9 98 81.6
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.7e-42 177.9 110 76.4
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.7e-42 177.9 110 76.4
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.2e-41 174.5 121 72.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 2.0e-40 172.6 111 73.9
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.8e-40 171.0 110 74.5
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 2.4e-38 165.6 127 65.4
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 8.6e-36 157.1 102 74.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.9e-35 156.0 98 82.7
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.9e-33 147.1 81 77.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.4e-30 139.0 78 75.6
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 3.2e-30 138.7 124 58.9
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-26 125.9 85 71.8
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 3.1e-25 122.1 65 81.5
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 7.6e-24 117.5 111 55.0
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 7.8e-21 107.5 107 45.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.9e-19 102.8 62 75.8
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 2.8e-18 99.0 57 77.2
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 1.2e-16 93.6 69 65.2
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.4e-16 91.7 52 76.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 5.8e-16 91.3 713 22.9
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 2.7e-13 82.4 81 53.1
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 4.3e-11 75.1 50 76.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 5.6e-11 74.7 68 51.5
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 3.6e-10 72.0 99 43.4
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.4e-08 65.5 371 21.3
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 4.9e-07 61.6 52 59.6


User provided reference genes

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