Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03309 Eucalyptus grandis HOM05D002958 ORTHO05D194207 1.9e-80 302.4 147 100.0
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 4.7e-10 68.6 85 48.2
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 5.2e-09 65.1 43 65.1
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 1.2e-08 63.9 127 37.8
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 1.2e-08 63.9 60 50.0
MSTRG.15237 Avicennia marina HOM05D002958 ORTHO05D003558 1.2e-08 63.9 85 45.9
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 1.5e-08 63.5 83 44.6
Eucgr.F01149 Eucalyptus grandis HOM05D002958 ORTHO05D003558 2.6e-08 62.8 43 67.4
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 2.6e-08 62.8 43 67.4
Rhsim06G0199700 Rhododendron simsii HOM05D002958 ORTHO05D003558 3.4e-08 62.4 43 65.1
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 4.4e-08 62.0 85 42.4
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 4.4e-08 62.0 43 69.8
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 5.8e-08 61.6 41 68.3
Sabra11G0103200 Salix brachista HOM05D002958 ORTHO05D003558 5.8e-08 61.6 43 62.8
Actinidia09690 Actinidia chinensis HOM05D002958 ORTHO05D003558 7.5e-08 61.2 43 65.1
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 7.5e-08 61.2 94 40.4
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 7.5e-08 61.2 43 65.1
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 7.5e-08 61.2 43 65.1
ECA240G3077 Erigeron canadensis HOM05D002958 ORTHO05D003558 7.5e-08 61.2 61 55.7
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 7.5e-08 61.2 61 52.5
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 7.5e-08 61.2 43 62.8
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 7.5e-08 61.2 44 59.1
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 7.5e-08 61.2 43 58.1
VMungo1080G0087 Vigna mungo HOM05D002958 ORTHO05D003558 7.5e-08 61.2 85 42.4
VMungo1080G0249 Vigna mungo HOM05D002958 ORTHO05D003558 9.8e-08 60.8 64 48.4
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 1.3e-07 60.5 84 42.9
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 1.3e-07 60.5 61 52.5
Gohir.A13G146200 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.3e-07 60.5 32 71.9
Gohir.D13G152056 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.3e-07 60.5 32 71.9
Gorai.013G169100 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.3e-07 60.5 32 71.9
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 1.3e-07 60.5 43 65.1
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 1.3e-07 60.5 65 49.2
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 1.3e-07 60.5 32 75.0
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 1.3e-07 60.5 43 62.8
vmacro11871 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 1.3e-07 60.5 43 65.1
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.7e-07 60.1 32 75.0
Actinidia35245 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.7e-07 60.1 43 69.8
Aqoxy1G02381 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.7e-07 60.1 43 62.8
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 1.7e-07 60.1 43 62.8
Dinv20182 Davidia involucrata HOM05D002958 ORTHO05D003558 1.7e-07 60.1 43 62.8
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 1.7e-07 60.1 43 60.5
Gohir.A13G147033 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.7e-07 60.1 32 68.8
Lsat_1_v5_gn_9_97501 Lactuca sativa HOM05D002958 ORTHO05D003558 1.7e-07 60.1 43 65.1
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 2.2e-07 59.7 64 46.9
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 2.2e-07 59.7 41 68.3
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 2.2e-07 59.7 43 62.8
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 2.2e-07 59.7 43 60.5
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 2.2e-07 59.7 43 62.8
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 2.2e-07 59.7 43 62.8
EL10Ac9g20906 Beta vulgaris HOM05D002958 ORTHO05D003558 2.9e-07 59.3 45 57.8
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 2.9e-07 59.3 32 71.9
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 2.9e-07 59.3 32 71.9
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 2.9e-07 59.3 44 59.1
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 2.9e-07 59.3 28 82.1
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 2.9e-07 59.3 32 75.0
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 2.9e-07 59.3 43 67.4
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 2.9e-07 59.3 43 60.5
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 3.7e-07 58.9 57 45.6
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 3.7e-07 58.9 43 60.5
HanXRQChr12g0364161 Helianthus annuus HOM05D002958 ORTHO05D003558 3.7e-07 58.9 43 65.1
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 3.7e-07 58.9 49 51.0
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 4.9e-07 58.5 44 61.4
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 4.9e-07 58.5 35 68.6
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 4.9e-07 58.5 67 43.3
MELO3C016693.2 Cucumis melo HOM05D002958 ORTHO05D003558 4.9e-07 58.5 65 41.5
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 4.9e-07 58.5 43 60.5
Potri.011G118132 Populus trichocarpa HOM05D002958 ORTHO05D003558 4.9e-07 58.5 43 60.5
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 6.4e-07 58.2 43 60.5
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 6.4e-07 58.2 43 60.5
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 6.4e-07 58.2 43 62.8
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 6.4e-07 58.2 41 65.9
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 6.4e-07 58.2 43 58.1
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 6.4e-07 58.2 43 60.5
Aqoxy4G00736 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 8.3e-07 57.8 54 50.0
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 8.3e-07 57.8 62 46.8
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 8.3e-07 57.8 43 58.1
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 8.3e-07 57.8 34 64.7
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 8.3e-07 57.8 32 68.8
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 8.3e-07 57.8 32 68.8
MBI06_g20686_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 8.3e-07 57.8 43 60.5
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 8.3e-07 57.8 43 60.5
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 8.3e-07 57.8 41 65.9
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 8.3e-07 57.8 27 81.5
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 1.1e-06 57.4 43 58.1
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 1.1e-06 57.4 43 60.5
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 1.1e-06 57.4 35 65.7
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 1.1e-06 57.4 35 65.7
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 1.1e-06 57.4 43 58.1
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 1.1e-06 57.4 32 65.6
Sed0005351 Sechium edule HOM05D002958 ORTHO05D003558 1.1e-06 57.4 44 56.8
Atru.chr2.2483 Acer truncatum HOM05D002958 ORTHO05D003558 1.4e-06 57.0 32 65.6
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 1.4e-06 57.0 41 61.0
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 1.4e-06 57.0 43 60.5
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.4e-06 57.0 85 38.8
Peaxi162Scf00027g00211 Petunia axillaris HOM05D002958 ORTHO05D003558 1.4e-06 57.0 43 60.5
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 1.4e-06 57.0 43 60.5
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 1.4e-06 57.0 43 53.5
Aqoxy167s001 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.9e-06 56.6 54 48.1
Aqoxy4G00995 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.9e-06 56.6 54 48.1
Aqoxy7G02353 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.9e-06 56.6 54 48.1
Aqoxy7G03109 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.9e-06 56.6 54 48.1
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 1.9e-06 56.6 50 54.0
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 1.9e-06 56.6 64 46.9
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 1.9e-06 56.6 80 43.8
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 1.9e-06 56.6 43 58.1
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 2.4e-06 56.2 41 58.5
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 2.4e-06 56.2 44 59.1
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 2.4e-06 56.2 43 60.5
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 2.4e-06 56.2 32 65.6
SGA_v2.0_scaffold73G24254 Striga asiatica HOM05D002958 ORTHO05D003558 2.4e-06 56.2 43 60.5
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 58.1
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 3.2e-06 55.8 42 57.1
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 60.5
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 58.1
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 55.8
Hund02228 Selenicereus undatus HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 58.1
Sopen10g002950 Solanum pennellii HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 60.5
PGSC0003DMG400025041 Solanum tuberosum HOM05D002958 ORTHO05D003558 3.2e-06 55.8 43 60.5
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 4.1e-06 55.5 43 58.1
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 4.1e-06 55.5 62 45.2
Solyc10g007050.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 4.1e-06 55.5 43 60.5
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 4.1e-06 55.5 62 45.2
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 5.4e-06 55.1 41 61.0
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 5.4e-06 55.1 41 61.0
CAN.G1119.24 Capsicum annuum HOM05D002958 ORTHO05D003558 5.4e-06 55.1 41 61.0
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 5.4e-06 55.1 42 57.1
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 5.4e-06 55.1 32 65.6
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 5.4e-06 55.1 28 71.4
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 5.4e-06 55.1 32 65.6
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 7.0e-06 54.7 41 61.0
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 7.0e-06 54.7 41 61.0
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 7.0e-06 54.7 41 61.0
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 7.0e-06 54.7 41 61.0
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 7.0e-06 54.7 41 61.0
ClCG05G009310 Citrullus lanatus HOM05D002958 ORTHO05D003558 7.0e-06 54.7 44 54.5
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 7.0e-06 54.7 43 58.1
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 7.0e-06 54.7 41 61.0
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.0e-06 54.7 53 49.1
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.0e-06 54.7 53 49.1
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.0e-06 54.7 53 49.1
Lj3g0007256 Lotus japonicus HOM05D002958 ORTHO05D003558 7.0e-06 54.7 43 55.8
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 7.0e-06 54.7 27 74.1
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 9.2e-06 54.3 41 61.0
A10p32320 Brassica napus HOM05D002958 ORTHO05D003558 9.2e-06 54.3 41 58.5
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 9.2e-06 54.3 41 61.0
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 9.2e-06 54.3 41 61.0
CSS0011837 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 9.2e-06 54.3 33 63.6
Cpa.g.sc80.76 Carica papaya HOM05D002958 ORTHO05D003558 9.2e-06 54.3 39 64.1
COL.COLO4_36342 Corchorus olitorius HOM05D002958 ORTHO05D003558 9.2e-06 54.3 69 44.9
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 9.2e-06 54.3 43 51.2


User provided reference genes

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