Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 1.3e-31 139.0 67 100.0
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 1.6e-18 95.5 67 67.2
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 6.2e-18 93.6 68 69.1
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 2.9e-15 84.7 61 60.7
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 4.9e-15 84.0 73 61.6
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 4.9e-15 84.0 69 60.9
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 6.4e-15 83.6 70 60.0
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 8.4e-15 83.2 66 63.6
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 1.1e-14 82.8 66 63.6
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 2.4e-14 81.6 61 59.0
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 3.2e-14 81.3 67 64.2
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 4.2e-14 80.9 69 58.0
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 7.1e-14 80.1 65 60.0
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 1.6e-13 79.0 66 62.1
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 2.1e-13 78.6 68 61.8
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 2.7e-13 78.2 69 56.5
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 3.5e-13 77.8 59 66.1
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 4.6e-13 77.4 65 58.5
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 4.6e-13 77.4 67 58.2
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 6.0e-13 77.0 61 59.0
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 1.0e-12 76.3 61 57.4
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 1.0e-12 76.3 70 55.7
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 1.3e-12 75.9 67 61.2
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 1.8e-12 75.5 61 59.0
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 2.3e-12 75.1 65 56.9
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 3.0e-12 74.7 51 66.7
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 6.7e-12 73.6 66 57.6
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 8.7e-12 73.2 67 53.7
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 8.7e-12 73.2 67 53.7
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.1e-11 72.8 67 53.7
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 1.5e-11 72.4 51 66.7
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 1.5e-11 72.4 50 62.0
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 3.3e-11 71.2 50 62.0
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 3.3e-11 71.2 65 56.9
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 3.3e-11 71.2 65 50.8
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 4.3e-11 70.9 61 55.7
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 5.6e-11 70.5 46 69.6
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 5.6e-11 70.5 65 50.8
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 7.4e-11 70.1 68 52.9
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 1.3e-10 69.3 65 53.8
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 1.6e-10 68.9 46 69.6
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 1.6e-10 68.9 53 64.2
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 4.8e-10 67.4 66 53.0
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 8.2e-10 66.6 63 50.8
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 1.1e-09 66.2 64 50.0
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 1.4e-09 65.9 44 63.6
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 1.8e-09 65.5 66 51.5
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 1.8e-09 65.5 59 55.9
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 2.4e-09 65.1 37 78.4
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 4.0e-09 64.3 64 51.6
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 6.9e-09 63.5 60 50.0
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 6.9e-09 63.5 62 53.2
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 9.0e-09 63.2 64 51.6
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 1.2e-08 62.8 66 50.0
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 1.2e-08 62.8 52 55.8
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 1.2e-08 62.8 62 48.4
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 4.5e-08 60.8 39 61.5
Nn1g04456 Nelumbo nucifera HOM05D008148 ORTHO05D010295 2.9e-07 58.2 54 51.9
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 4.9e-07 57.4 65 49.2
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 2.5e-06 55.1 51 52.9
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 7.1e-06 53.5 51 52.9


User provided reference genes

Program Settings