Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03263 Eucalyptus grandis HOM05D000692 ORTHO05D194682 2.2e-51 205.3 100 100.0
Eucgr.F03262 Eucalyptus grandis HOM05D000692 ORTHO05D000533 6.5e-11 70.9 75 52.0
Manes.03G102300 Manihot esculenta HOM05D000692 ORTHO05D000533 4.2e-10 68.2 86 44.2
Gohir.D06G207600 Gossypium hirsutum HOM05D000692 ORTHO05D000533 1.6e-09 66.2 86 40.7
Gorai.010G242000 Gossypium raimondii HOM05D000692 ORTHO05D000533 1.6e-09 66.2 86 40.7
HanXRQChr04g0115941 Helianthus annuus HOM05D000692 ORTHO05D000533 2.7e-09 65.5 78 41.0
Sopen02g021800 Solanum pennellii HOM05D000692 ORTHO05D000533 3.5e-09 65.1 78 41.0
CAN.G370.69 Capsicum annuum HOM05D000692 ORTHO05D000533 4.6e-09 64.7 78 42.3
Gorai.009G163100 Gossypium raimondii HOM05D000692 ORTHO05D000533 4.6e-09 64.7 86 41.9
COL.COLO4_31305 Corchorus olitorius HOM05D000692 ORTHO05D000533 6.0e-09 64.3 86 39.5
MBI06_g26005_MAGBIO Magnolia biondii HOM05D000692 ORTHO05D000533 6.0e-09 64.3 86 40.7
Gohir.D05G158300 Gossypium hirsutum HOM05D000692 ORTHO05D000533 7.9e-09 63.9 86 41.9
PGSC0003DMG400010201 Solanum tuberosum HOM05D000692 ORTHO05D000533 7.9e-09 63.9 78 39.7
CANSAT35G2058 Cannabis sativa HOM05D000692 ORTHO05D000533 1.0e-08 63.5 75 41.3
Dinv33985 Davidia involucrata HOM05D000692 ORTHO05D000533 1.0e-08 63.5 75 42.7
Gohir.A06G200300 Gossypium hirsutum HOM05D000692 ORTHO05D000533 1.0e-08 63.5 86 38.4
Lj4P179T19 Lonicera japonica HOM05D000692 ORTHO05D000533 1.0e-08 63.5 75 42.7
Nitab4.5_0006225g0010 Nicotiana tabacum HOM05D000692 ORTHO05D000533 1.0e-08 63.5 78 39.7
Peaxi162Scf00162g00141 Petunia axillaris HOM05D000692 ORTHO05D000533 1.0e-08 63.5 75 41.3
Gohir.A05G155400 Gossypium hirsutum HOM05D000692 ORTHO05D000533 1.3e-08 63.2 86 40.7
SalBow7G0770 Salvia bowleyana HOM05D000692 ORTHO05D000533 1.3e-08 63.2 75 41.3
Cfa021356 Carpinus fangiana HOM05D000692 ORTHO05D000533 1.8e-08 62.8 60 50.0
Haze_13356 Corylus avellana HOM05D000692 ORTHO05D000533 1.8e-08 62.8 78 39.7
Dinv32218 Davidia involucrata HOM05D000692 ORTHO05D000533 1.8e-08 62.8 75 41.3
Duzib192G0773 Durio zibethinus HOM05D000692 ORTHO05D000533 1.8e-08 62.8 86 39.5
ECA236G1655 Erigeron canadensis HOM05D000692 ORTHO05D000533 1.8e-08 62.8 75 41.3
TAR629G0520 Trochodendron aralioides HOM05D000692 ORTHO05D000533 1.8e-08 62.8 75 41.3
CANSAT64G0790 Cannabis sativa HOM05D000692 ORTHO05D000533 2.3e-08 62.4 75 41.3
Cc02_g14870 Coffea canephora HOM05D000692 ORTHO05D000533 2.3e-08 62.4 86 38.4
Hma1.2p1_0283F.1_g113650 Hydrangea macrophylla HOM05D000692 ORTHO05D000533 2.3e-08 62.4 75 41.3
Manes.17G055300 Manihot esculenta HOM05D000692 ORTHO05D000533 2.3e-08 62.4 86 38.4
PSO675G1168 Papaver somniferum HOM05D000692 ORTHO05D000533 2.3e-08 62.4 75 41.3
Lj2A298T36 Lonicera japonica HOM05D000692 ORTHO05D000533 3.0e-08 62.0 75 41.3
Glyma.13G291100 Glycine max HOM05D000692 ORTHO05D000533 3.9e-08 61.6 86 38.4
COL.COLO4_33571 Corchorus olitorius HOM05D000692 ORTHO05D000533 5.1e-08 61.2 78 38.5
Potri.004G084600 Populus trichocarpa HOM05D000692 ORTHO05D000533 5.1e-08 61.2 75 40.0
RcHm_v2.0_Chr2g0129271 Rosa chinensis HOM05D000692 ORTHO05D000533 5.1e-08 61.2 78 38.5
SalBow8G4716 Salvia bowleyana HOM05D000692 ORTHO05D000533 5.1e-08 61.2 125 33.6
Dinv16761 Davidia involucrata HOM05D000692 ORTHO05D000533 6.7e-08 60.8 75 41.3
Sopen03g002190 Solanum pennellii HOM05D000692 ORTHO05D000533 6.7e-08 60.8 75 40.0
Zm00001eb158180 Zea mays HOM05D000692 ORTHO05D000533 6.7e-08 60.8 75 40.0
Atru.chr10.1673 Acer truncatum HOM05D000692 ORTHO05D000533 8.7e-08 60.5 75 38.7
Hma1.2p1_0500F.1_g166910 Hydrangea macrophylla HOM05D000692 ORTHO05D000533 8.7e-08 60.5 86 36.0
Hma1.2p1_1820F.1_g304199 Hydrangea macrophylla HOM05D000692 ORTHO05D000533 8.7e-08 60.5 86 36.0
Phvul.005G095700 Phaseolus vulgaris HOM05D000692 ORTHO05D000533 8.7e-08 60.5 86 37.2
Potri.004G056700 Populus trichocarpa HOM05D000692 ORTHO05D000533 8.7e-08 60.5 86 34.9
Prupe.3G121500 Prunus persica HOM05D000692 ORTHO05D000533 8.7e-08 60.5 78 38.5
PGSC0003DMG400010204 Solanum tuberosum HOM05D000692 ORTHO05D000533 8.7e-08 60.5 79 36.7
TAR627G0352 Trochodendron aralioides HOM05D000050 ORTHO05D002706 8.7e-08 60.5 75 40.0
VMungo1080G1487 Vigna mungo HOM05D000692 ORTHO05D000533 8.7e-08 60.5 86 37.2
Atru.chr6.2802 Acer truncatum HOM05D000692 ORTHO05D000533 1.1e-07 60.1 78 38.5
arahy.Tifrunner.gnm1.ann1.E28A1S Arachis hypogaea HOM05D000692 ORTHO05D000533 1.1e-07 60.1 75 40.0
CSS0041309 Camellia sinensis var. sinensis HOM05D000692 ORTHO05D000533 1.1e-07 60.1 75 38.7
CSS0044725 Camellia sinensis var. sinensis HOM05D000692 ORTHO05D000533 1.1e-07 60.1 75 37.3
Actinidia07637 Actinidia chinensis HOM05D000692 ORTHO05D000533 1.5e-07 59.7 75 38.7
PGSC0003DMG400039642 Solanum tuberosum HOM05D000692 ORTHO05D000533 1.5e-07 59.7 75 40.0
PGSC0003DMG402004382 Solanum tuberosum HOM05D000692 ORTHO05D000533 1.5e-07 59.7 75 40.0
Lsat_1_v5_gn_7_24060 Lactuca sativa HOM05D000692 ORTHO05D000533 1.9e-07 59.3 75 38.7
PGSC0003DMG400010203 Solanum tuberosum HOM05D000692 ORTHO05D000533 1.9e-07 59.3 79 35.4
DCAR_021453 Daucus carota HOM05D000692 ORTHO05D000533 2.5e-07 58.9 75 38.7
Eucgr.D00492 Eucalyptus grandis HOM05D000692 ORTHO05D000533 2.5e-07 58.9 74 39.2
Nitab4.5_0007975g0010 Nicotiana tabacum HOM05D000692 ORTHO05D000533 2.5e-07 58.9 75 40.0
PGSC0003DMG400010202 Solanum tuberosum HOM05D000692 ORTHO05D000533 2.5e-07 58.9 79 35.4
Thecc.06G171400 Theobroma cacao HOM05D000692 ORTHO05D000533 2.5e-07 58.9 86 37.2
GSVIVG01020700001 Vitis vinifera HOM05D000692 ORTHO05D000533 2.5e-07 58.9 75 38.7
Hma1.2p1_0987F.1_g244590 Hydrangea macrophylla HOM05D000692 ORTHO05D000533 3.3e-07 58.5 75 38.7
Os12g0563600 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 3.3e-07 58.5 79 36.7
MELO3C023553.2 Cucumis melo HOM05D000692 ORTHO05D000533 4.3e-07 58.2 78 34.6
Duzib160G0223 Durio zibethinus HOM05D000692 ORTHO05D000533 4.3e-07 58.2 86 38.4
Lj1P1193T29 Lonicera japonica HOM05D000692 ORTHO05D000533 4.3e-07 58.2 78 35.9
Lj1P831T46 Lonicera japonica HOM05D000692 ORTHO05D000533 4.3e-07 58.2 81 34.6
PGR004G1661 Punica granatum HOM05D000692 ORTHO05D000533 4.3e-07 58.2 75 38.7
TWI14G0219 Tripterygium wilfordii HOM05D000692 ORTHO05D000533 4.3e-07 58.2 79 35.4
Aqoxy1G02077 Aquilegia oxysepala HOM05D000692 ORTHO05D000533 5.7e-07 57.8 75 37.3
Migut.H01989 Erythranthe guttata HOM05D000692 ORTHO05D000533 5.7e-07 57.8 75 40.0
PGR004G1469 Punica granatum HOM05D000692 ORTHO05D000533 5.7e-07 57.8 75 38.7
RcHm_v2.0_Chr5g0010731 Rosa chinensis HOM05D000692 ORTHO05D000533 5.7e-07 57.8 75 37.3
ATR0602G139 Amborella trichopoda HOM05D000692 ORTHO05D000533 7.4e-07 57.4 75 38.7
Cpa.g.sc209.35 Carica papaya HOM05D000692 ORTHO05D000533 7.4e-07 57.4 75 37.3
CsaV3_7G031030 Cucumis sativus L. HOM05D000692 ORTHO05D000533 7.4e-07 57.4 78 34.6
Migut.H01426 Erythranthe guttata HOM05D000692 ORTHO05D000533 7.4e-07 57.4 75 38.7
Glyma.12G210200 Glycine max HOM05D000692 ORTHO05D000533 7.4e-07 57.4 86 36.0
PSO761G0225 Papaver somniferum HOM05D000692 ORTHO05D000533 7.4e-07 57.4 79 39.2
Prupe.4G060700 Prunus persica HOM05D000692 ORTHO05D000533 7.4e-07 57.4 75 40.0
Zm00001eb136750 Zea mays HOM05D000692 ORTHO05D000533 7.4e-07 57.4 79 34.2
Ciclev10017804m.g Citrus clementina HOM05D000692 ORTHO05D000533 9.6e-07 57.0 75 38.7
Duzib147G1034 Durio zibethinus HOM05D000692 ORTHO05D000533 9.6e-07 57.0 78 35.9
Os01g0652700 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 9.6e-07 57.0 75 38.7
Ciclev10017452m.g Citrus clementina HOM05D000692 ORTHO05D000533 1.3e-06 56.6 79 39.2
FAN21G3741 Fragaria x ananassa HOM05D000692 ORTHO05D000533 1.3e-06 56.6 75 38.7
MBI07_g03171_MAGBIO Magnolia biondii HOM05D000692 ORTHO05D000533 1.3e-06 56.6 41 61.0
Nitab4.5_0002076g0050 Nicotiana tabacum HOM05D000692 ORTHO05D000533 1.3e-06 56.6 75 40.0
Prupe.4G060600 Prunus persica HOM05D000692 ORTHO05D000533 1.3e-06 56.6 75 37.3
Solyc02g076890.1 Solanum lycopersicum HOM05D000692 ORTHO05D000533 1.3e-06 56.6 79 35.4
SGA_v2.0_scaffold37G14588 Striga asiatica HOM05D000692 ORTHO05D000533 1.3e-06 56.6 79 36.7
Thecc.01G149800 Theobroma cacao HOM05D000692 ORTHO05D000533 1.3e-06 56.6 86 34.9
Atru.chr2.3892 Acer truncatum HOM05D000692 ORTHO05D000533 1.6e-06 56.2 86 38.4
FAN16G0855 Fragaria x ananassa HOM05D000692 ORTHO05D000533 1.6e-06 56.2 75 37.3
FAN25G0885 Fragaria x ananassa HOM05D000692 ORTHO05D000533 1.6e-06 56.2 75 37.3
Potri.017G133300 Populus trichocarpa HOM05D000692 ORTHO05D000533 1.6e-06 56.2 76 39.5
Sed0025585 Sechium edule HOM05D000692 ORTHO05D000533 1.6e-06 56.2 78 34.6
Aqoxy4G00372 Aquilegia oxysepala HOM05D000692 ORTHO05D000533 2.1e-06 55.8 86 34.9
Ciclev10018346m.g Citrus clementina HOM05D000692 ORTHO05D000533 2.1e-06 55.8 78 35.9
Dinv03823 Davidia involucrata HOM05D000692 ORTHO05D000533 2.1e-06 55.8 73 39.7
QL08p041548 Quercus lobata HOM05D000692 ORTHO05D000533 2.1e-06 55.8 42 57.1
CiPaw.03G187600 Carya illinoinensis HOM05D000692 ORTHO05D000533 2.8e-06 55.5 78 35.9
PSO210G5066 Papaver somniferum HOM05D000692 ORTHO05D000533 2.8e-06 55.5 79 38.0
PSO541G4067 Papaver somniferum HOM05D000692 ORTHO05D000533 2.8e-06 55.5 75 38.7
CSS0032068 Camellia sinensis var. sinensis HOM05D000692 ORTHO05D000533 3.7e-06 55.1 73 39.7
Dinv18354 Davidia involucrata HOM05D000692 ORTHO05D000533 3.7e-06 55.1 75 37.3
Lj6g0017082 Lotus japonicus HOM05D000692 ORTHO05D000533 3.7e-06 55.1 117 30.8
Sopen02g021810 Solanum pennellii HOM05D000692 ORTHO05D000533 3.7e-06 55.1 79 34.2
Actinidia01877 Actinidia chinensis HOM05D000692 ORTHO05D000533 4.8e-06 54.7 77 40.3
ClCG09G004130 Citrullus lanatus HOM05D000692 ORTHO05D000533 4.8e-06 54.7 78 33.3
FvH4_3g07840 Fragaria vesca HOM05D000692 ORTHO05D000533 4.8e-06 54.7 75 36.0
FvH4_6g24940 Fragaria vesca HOM05D000692 ORTHO05D000533 4.8e-06 54.7 75 36.0
FAN02G1259 Fragaria x ananassa HOM05D000692 ORTHO05D000533 4.8e-06 54.7 75 36.0
FAN11G0719 Fragaria x ananassa HOM05D000692 ORTHO05D000533 4.8e-06 54.7 75 36.0
FAN14G4671 Fragaria x ananassa HOM05D000692 ORTHO05D000533 4.8e-06 54.7 75 36.0
Nitab4.5_0003838g0030 Nicotiana tabacum HOM05D000692 ORTHO05D000533 4.8e-06 54.7 79 35.4
Oeu019846.1 Olea europaea HOM05D000692 ORTHO05D000533 4.8e-06 54.7 81 35.8
Oeu059267.1 Olea europaea HOM05D000692 ORTHO05D000533 4.8e-06 54.7 75 36.0
Gohir.A09G001700 Gossypium hirsutum HOM05D000692 ORTHO05D000533 6.2e-06 54.3 78 34.6
Gohir.D09G001400 Gossypium hirsutum HOM05D000692 ORTHO05D000533 6.2e-06 54.3 78 34.6
Gorai.006G001600 Gossypium raimondii HOM05D000692 ORTHO05D000533 6.2e-06 54.3 78 34.6
HanXRQChr15g0469321 Helianthus annuus HOM05D000692 ORTHO05D000533 6.2e-06 54.3 78 37.2
Sopen02g021820 Solanum pennellii HOM05D000692 ORTHO05D000533 6.2e-06 54.3 79 30.4
PGR042G0814 Punica granatum HOM05D000692 ORTHO05D000533 8.2e-06 53.9 78 35.9
TPR.G1665 Trifolium pratense HOM05D000692 ORTHO05D000533 8.2e-06 53.9 76 38.2


User provided reference genes

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