Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.9e-152 541.6 304 100.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 4.6e-92 342.0 254 78.7
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 7.8e-92 341.3 253 79.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.0e-91 340.9 256 76.2
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.7e-91 340.1 253 75.5
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.7e-91 340.1 254 78.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.0e-91 338.6 254 72.4
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 6.6e-91 338.2 255 74.9
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 6.6e-91 338.2 252 75.4
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 8.6e-91 337.8 253 76.3
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 8.6e-91 337.8 254 75.2
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.1e-90 337.4 253 76.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.5e-90 337.0 256 75.8
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.5e-90 337.0 245 77.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.9e-90 336.7 255 76.1
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.5e-90 336.3 253 74.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 4.3e-90 335.5 256 74.2
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 4.3e-90 335.5 256 75.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.3e-90 335.5 252 75.8
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.6e-90 335.1 254 76.4
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.5e-90 334.3 256 75.4
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.2e-89 334.0 255 75.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.1e-89 333.2 259 74.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 3.6e-89 332.4 257 77.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.7e-89 332.0 257 75.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.2e-89 331.6 255 78.0
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.4e-88 330.5 254 72.0
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.4e-88 330.5 254 72.8
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.4e-88 330.5 254 79.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-88 330.1 250 75.6
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.8e-88 330.1 254 74.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 3.1e-88 329.3 255 73.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.0e-88 328.9 250 75.2
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.2e-88 328.6 255 75.3
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 5.2e-88 328.6 247 80.2
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 6.8e-88 328.2 248 76.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 8.9e-88 327.8 250 76.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.2e-87 327.4 254 72.0
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.5e-87 327.0 255 74.1
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.6e-87 326.2 265 70.2
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 3.4e-87 325.9 256 75.4
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 5.8e-87 325.1 254 73.6
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.3e-86 323.9 251 76.1
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.3e-86 323.9 255 73.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 2.2e-86 323.2 254 74.4
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.9e-86 322.0 249 73.1
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.9e-86 322.0 255 70.6
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 4.9e-86 322.0 251 76.9
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.1e-85 320.9 251 72.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.1e-85 320.9 255 76.9
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.4e-85 320.5 251 71.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.9e-85 320.1 249 74.7
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.4e-85 319.7 248 76.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.4e-85 319.7 256 73.4
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.1e-85 318.9 251 72.1
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.1e-85 318.9 255 76.1
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 5.4e-85 318.5 243 71.2
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 7.1e-85 318.2 244 75.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.2e-85 317.8 251 70.9
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.2e-84 317.4 255 71.8
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.2e-84 317.4 249 74.3
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.6e-84 317.0 244 75.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.6e-84 317.0 253 70.4
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 6.0e-84 315.1 255 72.9
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.7e-83 313.5 245 71.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.3e-83 313.2 251 69.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.0e-83 312.8 250 72.8
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.9e-83 312.4 260 68.1
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.9e-82 310.1 272 68.0
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 4.3e-82 308.9 242 71.5
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 4.3e-82 308.9 248 72.2
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 7.3e-82 308.1 242 72.7
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.2e-81 307.4 243 74.5
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-81 305.4 246 71.1
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 6.2e-81 305.1 246 72.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.8e-80 303.5 247 73.7
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.3e-80 303.1 253 72.3
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.1e-80 302.8 247 73.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 5.2e-80 302.0 247 73.3
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 5.2e-80 302.0 255 71.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.5e-79 300.4 215 69.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.4e-79 299.3 236 72.0
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.9e-78 296.2 237 71.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-77 294.3 247 67.2
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.4e-77 293.9 237 70.5
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.9e-77 293.5 259 64.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.2e-76 290.8 194 75.3
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.6e-76 290.4 203 73.9
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.1e-76 290.0 243 69.1
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.1e-76 290.0 247 67.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.5e-76 289.3 249 69.1
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.0e-75 287.7 347 53.0
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.3e-75 287.3 248 69.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.7e-75 287.0 248 69.0
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 5.1e-75 285.4 260 64.6
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.5e-74 283.9 213 68.5
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.9e-74 283.5 243 67.1
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 4.3e-74 282.3 248 65.7
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.6e-74 282.0 295 63.1
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 9.6e-74 281.2 247 66.4
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.2e-73 280.8 253 66.0
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.6e-73 279.3 334 56.9
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-72 277.7 253 65.2
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.1e-72 276.2 246 67.1
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.1e-72 276.2 254 65.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 4.4e-71 272.3 250 64.0
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.4e-69 267.3 275 60.7
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.7e-67 260.4 252 61.1
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.1e-66 257.7 245 65.3
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.5e-66 256.5 305 52.1
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.3e-66 255.0 245 58.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 3.6e-65 252.7 249 59.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 6.2e-65 251.9 248 64.1
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 5.8e-63 245.4 167 79.6
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.9e-62 243.0 250 58.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.8e-57 225.7 251 55.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.6e-55 219.9 247 57.5
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 3.8e-54 216.1 247 59.1
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.6e-52 209.1 243 55.6
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.7e-51 205.3 220 55.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.3e-49 201.1 148 70.3
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.1e-49 198.4 239 52.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 4.0e-48 196.1 136 72.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.0e-47 193.7 231 48.1
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 7.9e-44 181.8 167 64.1
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 5.1e-43 179.1 148 75.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.1e-41 173.7 126 72.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 4.1e-40 169.5 144 62.5
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-35 153.7 158 52.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.9e-34 150.6 131 64.1
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 3.7e-33 146.4 256 38.3
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.7e-33 146.4 340 43.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-32 144.8 192 56.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.5e-31 139.4 216 39.8
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.9e-29 134.0 115 80.9
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.9e-29 134.0 227 39.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.0e-27 128.3 219 39.3
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.0e-27 126.7 108 73.1
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 9.1e-24 115.2 92 63.0
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.2e-23 114.8 72 77.8
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-21 107.8 61 80.3
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-20 104.4 79 65.8
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 6.7e-19 99.0 79 63.3
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.0e-12 75.5 78 69.2
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.8e-08 64.3 160 33.1
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.5e-07 59.7 34 79.4
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.9e-07 59.3 183 29.5
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.3e-06 58.2 38 71.1


User provided reference genes

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