Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 3.5e-266 921.0 448 100.0
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.1e-224 783.1 449 80.2
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 5.0e-212 741.1 450 77.6
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.6e-210 736.1 449 77.1
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.8e-209 732.6 450 78.0
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 2.0e-208 729.2 448 76.3
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.0e-208 729.2 449 77.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.7e-207 724.9 450 77.3
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.3e-207 724.2 449 77.1
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 2.4e-206 722.2 447 76.1
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.2e-205 719.9 449 76.2
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 2.0e-205 719.2 449 76.4
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.0e-205 719.2 447 76.3
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 7.7e-205 717.2 448 75.4
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.0e-204 716.8 449 75.7
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.0e-204 716.8 448 75.0
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-204 716.8 448 76.6
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.7e-204 716.1 448 76.3
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.7e-204 716.1 449 74.6
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.7e-204 716.1 450 76.0
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 2.9e-204 715.3 448 75.7
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.9e-204 715.3 448 75.0
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 5.0e-204 714.5 448 75.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.0e-204 714.5 410 80.0
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 8.5e-204 713.8 447 75.6
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 8.5e-204 713.8 448 75.4
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.5e-204 713.8 448 75.7
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.4e-203 713.0 448 77.7
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.4e-203 713.0 450 74.7
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.5e-203 712.2 448 76.1
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.2e-203 711.8 450 77.6
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 4.2e-203 711.4 451 74.5
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.2e-202 709.9 451 75.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.1e-202 709.1 452 75.4
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.7e-202 708.8 448 75.9
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.7e-202 708.8 449 74.4
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 2.7e-202 708.8 451 74.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.6e-202 708.4 449 75.7
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 6.1e-202 707.6 449 74.2
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 8.0e-202 707.2 449 75.5
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.0e-201 706.8 449 74.4
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.4e-201 706.4 449 74.8
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.3e-201 705.7 451 74.5
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.0e-201 705.3 447 74.5
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.9e-201 704.9 451 73.4
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.9e-201 704.9 451 74.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 6.7e-201 704.1 450 76.4
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 8.8e-201 703.7 447 74.5
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 8.8e-201 703.7 453 75.3
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 8.8e-201 703.7 451 74.7
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.1e-200 703.4 449 75.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.5e-200 703.0 450 75.1
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.5e-200 703.0 451 74.1
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.5e-200 703.0 450 74.9
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.0e-200 702.6 447 74.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.6e-200 702.2 449 74.8
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.3e-200 701.8 447 73.8
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 3.3e-200 701.8 451 74.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.3e-200 701.8 449 75.5
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 4.4e-200 701.4 450 74.9
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.4e-200 701.4 450 75.1
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.4e-200 701.4 451 73.4
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 7.4e-200 700.7 451 74.7
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 7.4e-200 700.7 449 75.5
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 7.4e-200 700.7 455 73.6
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 9.7e-200 700.3 448 73.2
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 9.7e-200 700.3 456 73.0
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 9.7e-200 700.3 450 74.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.7e-199 699.5 451 73.8
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.7e-199 699.5 446 74.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.2e-199 699.1 450 74.9
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.2e-199 699.1 451 74.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 6.3e-199 697.6 451 74.1
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 8.2e-199 697.2 451 74.3
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 8.2e-199 697.2 447 72.3
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 4.1e-198 694.9 413 77.7
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 9.1e-198 693.7 446 74.2
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.5e-197 691.8 448 71.4
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.9e-197 691.0 464 71.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 7.7e-197 690.6 438 76.0
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 7.7e-197 690.6 453 72.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.0e-196 690.3 446 74.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.8e-196 688.3 395 80.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.5e-195 686.4 446 72.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.9e-195 686.0 450 73.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.5e-195 685.6 414 75.4
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.2e-195 684.9 414 75.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 4.2e-195 684.9 486 68.5
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.5e-195 684.5 442 73.3
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 7.2e-195 684.1 380 80.3
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.4e-193 679.9 365 84.1
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.4e-193 679.9 414 77.1
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.8e-193 679.5 448 72.3
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.3e-193 679.1 517 64.2
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 3.0e-193 678.7 442 73.5
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 4.0e-193 678.3 360 85.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 8.8e-193 677.2 410 75.6
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 8.8e-193 677.2 373 83.6
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.5e-192 676.4 447 74.0
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.6e-192 675.6 454 71.8
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 4.4e-192 674.9 446 74.9
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 5.7e-192 674.5 443 75.4
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.2e-191 672.5 447 72.0
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 7.7e-189 664.1 447 72.0
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.7e-188 662.9 438 72.6
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.2e-188 662.5 409 75.3
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 6.5e-188 661.0 447 75.4
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 2.5e-187 659.1 451 70.7
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.5e-184 647.5 377 77.7
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.7e-183 645.2 449 69.5
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.6e-181 639.8 452 68.1
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.3e-180 636.7 442 70.6
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.7e-180 636.3 407 72.5
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.9e-180 635.6 448 69.0
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 2.0e-176 622.9 411 70.1
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 9.2e-174 614.0 324 85.2
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.2e-174 614.0 453 64.5
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.9e-171 606.3 322 85.7
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 8.0e-170 600.9 345 80.0
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 6.6e-164 581.3 440 64.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 5.2e-161 571.6 336 75.6
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.7e-159 566.6 411 67.4
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 8.3e-159 564.3 290 86.6
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 7.0e-158 561.2 291 86.9
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 7.3e-155 551.2 289 85.1
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 9.5e-155 550.8 353 75.1
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.3e-148 529.6 287 81.9
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.2e-144 517.3 334 68.0
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.3e-143 513.8 406 66.7
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.9e-139 500.0 266 84.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 9.3e-134 481.1 312 75.3
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.4e-126 456.4 283 75.6
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.4e-126 455.3 313 70.9
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 5.1e-124 448.7 333 58.6
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.3e-122 444.1 285 69.5
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.5e-112 409.1 342 53.8
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.2e-98 361.7 318 53.8
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 6.9e-97 358.6 282 63.5
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.3e-89 332.4 332 47.3
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.3e-66 258.1 142 81.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.7e-66 256.5 179 68.2
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.2e-56 224.9 109 91.7
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 5.2e-52 209.5 121 76.9
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 7.5e-51 205.7 119 73.9
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 6.0e-48 196.1 138 63.8
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.6e-45 188.0 127 69.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.9e-34 149.8 85 80.0
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.4e-33 148.3 85 78.8
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 5.8e-27 126.3 80 71.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.4e-25 121.7 104 56.7
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.1e-12 77.4 52 69.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 5.8e-11 73.2 126 33.3
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 2.4e-09 67.8 128 38.3


User provided reference genes

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