Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 8.3e-41 169.9 81 100.0
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.1e-21 106.3 73 69.9
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 4.7e-20 100.9 69 69.6
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.4e-19 99.4 74 64.9
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 8.9e-19 96.7 81 59.3
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 8.9e-19 96.7 74 67.6
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.5e-18 95.9 73 60.3
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.5e-18 95.9 73 60.3
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.5e-18 95.9 73 60.3
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.0e-18 95.5 73 60.3
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 2.6e-18 95.1 73 60.3
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 4.4e-18 94.4 69 60.9
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 2.9e-17 91.7 73 58.9
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 4.9e-17 90.9 70 61.4
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 6.4e-17 90.5 71 62.0
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 8.3e-17 90.1 53 67.9
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.1e-16 89.7 74 58.1
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.2e-16 88.2 79 55.7
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 7.0e-16 87.0 74 58.1
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 9.2e-16 86.7 78 59.0
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.0e-15 85.5 50 72.0
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.0e-15 85.5 79 50.6
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-15 85.1 72 56.9
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-15 85.1 72 56.9
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.5e-15 84.7 79 53.2
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.8e-15 83.6 79 51.9
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 1.0e-14 83.2 81 56.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.7e-14 82.4 79 57.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.7e-14 82.4 73 53.4
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 3.0e-14 81.6 70 55.7
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 3.9e-14 81.3 70 55.7
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 3.9e-14 81.3 82 51.2
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 5.0e-14 80.9 72 58.3
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 5.0e-14 80.9 72 58.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 8.6e-14 80.1 79 50.6
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 8.6e-14 80.1 73 53.4
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.5e-13 79.3 79 50.6
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.5e-13 79.3 70 54.3
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.9e-13 79.0 53 62.3
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.3e-13 78.2 75 53.3
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.6e-13 77.4 78 46.2
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 5.6e-13 77.4 67 58.2
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 9.5e-13 76.6 77 48.1
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 9.5e-13 76.6 73 54.8
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-12 76.3 72 54.2
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.6e-12 75.9 69 50.7
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 82 53.7
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-12 75.5 84 51.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-12 75.5 84 51.2
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 71 52.1
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 2.8e-12 75.1 70 57.1
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.7e-12 74.3 52 59.6
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 6.2e-12 73.9 69 53.6
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.2e-12 73.9 69 53.6
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 6.2e-12 73.9 70 52.9
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.1e-11 73.2 50 58.0
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.1e-11 73.2 70 51.4
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.4e-11 72.8 79 50.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.4e-11 72.8 72 47.2
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.8e-11 72.4 67 55.2
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 3.1e-11 71.6 71 50.7
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 4.0e-11 71.2 67 55.2
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.2e-11 70.9 73 54.8
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 6.8e-11 70.5 80 50.0
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 8.9e-11 70.1 69 47.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 8.9e-11 70.1 77 50.6
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 8.9e-11 70.1 70 51.4
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.2e-10 69.7 72 48.6
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 2.0e-10 68.9 50 62.0
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 2.6e-10 68.6 80 48.8
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 2.6e-10 68.6 65 55.4
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 3.4e-10 68.2 68 51.5
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 5.8e-10 67.4 61 54.1
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 1.3e-09 66.2 70 48.6
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-09 66.2 70 41.4
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.2e-09 65.5 51 56.9
QL02p025882 Quercus lobata HOM05D013878 ORTHO05D007342 2.2e-09 65.5 70 51.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.2e-09 65.5 53 62.3
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.9e-09 65.1 43 65.1
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 3.7e-09 64.7 76 47.4
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 3.7e-09 64.7 70 48.6
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 3.7e-09 64.7 82 47.6
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.4e-08 62.8 48 60.4
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 3.2e-08 61.6 48 52.1
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 3.2e-08 61.6 79 48.1
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 5.4e-08 60.8 83 45.8
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 5.4e-08 60.8 46 52.2
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 3.5e-07 58.2 63 44.4
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-07 57.8 79 46.8
MBI02_g08723_MAGBIO Magnolia biondii HOM05D007628 ORTHO05D007342 6.0e-07 57.4 36 61.1
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 6.0e-07 57.4 71 45.1
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 7.8e-07 57.0 81 42.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.8e-07 57.0 71 49.3
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.7e-06 55.8 73 42.5
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.0e-06 55.1 71 47.9
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 3.9e-06 54.7 84 48.8
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 6.6e-06 53.9 43 58.1
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 8.6e-06 53.5 78 46.2


User provided reference genes

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