Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1832.8 909 100.0
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1209.1 962 66.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1208.7 937 66.8
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1200.3 933 67.1
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 936 66.0
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1192.6 953 64.5
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1191.4 954 64.9
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 933 65.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1164.4 928 65.1
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1157.9 943 64.2
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1154.0 950 63.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 945 63.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1147.5 940 64.1
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 934 64.2
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 937 63.5
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 930 64.0
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1139.4 935 64.0
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 943 63.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 947 64.1
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 931 64.2
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1136.3 972 61.5
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 934 64.8
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 943 63.3
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 983 62.0
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 941 64.4
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1132.5 926 64.5
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1132.1 931 63.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 919 63.5
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 933 61.7
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 945 63.6
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1120.9 941 61.8
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1120.5 916 63.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1120.5 935 63.3
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 959 60.8
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1117.8 931 63.2
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 937 63.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 926 62.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1108.2 939 63.0
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 928 62.7
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 925 63.5
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 931 62.2
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 923 63.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 923 62.9
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1099.0 934 61.8
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 973 59.7
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 936 61.8
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 948 61.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 923 62.0
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1090.1 945 60.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1088.9 951 61.5
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 1007 57.7
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 935 61.6
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 1000 58.6
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1081.2 1000 58.6
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1081.2 1003 58.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 938 61.9
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 898 62.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 6.2e-312 1074.7 956 60.1
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.9e-311 1072.4 932 61.3
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 2.5e-311 1072.0 940 60.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 2.5e-311 1072.0 940 60.7
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.2e-310 1069.7 927 61.1
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 8.0e-310 1067.0 939 60.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 4.0e-309 1064.7 1033 57.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 6.8e-309 1063.9 928 61.2
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.5e-308 1062.8 932 61.5
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 4.4e-308 1061.2 931 60.7
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 7.5e-308 1060.4 948 59.6
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 4.9e-307 1057.7 941 60.6
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 4.9e-307 1057.7 941 60.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 5.4e-306 1054.3 914 60.2
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 923 61.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.0e-305 1052.4 865 65.4
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 7.8e-305 1050.4 924 59.6
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.3e-304 1049.7 978 57.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 3.9e-304 1048.1 974 57.8
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 5.0e-304 1047.7 934 60.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 8.6e-304 1047.0 935 60.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 1012 57.2
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 7.3e-303 1043.9 960 57.7
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 6.2e-302 1040.8 937 58.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 8.0e-302 1040.4 984 58.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.8e-301 1039.3 971 57.8
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.3e-299 1033.1 933 57.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-298 1029.6 929 59.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 1.4e-298 1029.6 929 59.3
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 3.0e-296 1021.9 935 58.9
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 3.6e-294 1015.0 1052 54.1
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.2e-294 1014.2 949 57.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.8e-293 1012.7 943 57.8
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 2.3e-293 1012.3 1001 55.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.8e-292 1007.7 1047 53.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 4.1e-290 1001.5 919 59.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 9.2e-290 1000.3 950 57.7
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.3e-288 995.7 915 59.2
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.0e-288 995.3 939 57.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.9e-287 992.6 822 64.0
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.8e-286 988.8 878 60.5
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.4e-284 981.5 932 57.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 2.2e-283 979.2 858 61.2
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.2e-283 979.2 935 57.8
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.9e-282 976.1 908 58.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.7e-281 972.2 985 54.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 3.9e-280 968.4 925 56.9
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.9e-279 966.1 845 60.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 9.0e-277 957.2 962 54.7
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.8e-276 954.5 1165 49.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.2e-274 948.7 1050 51.0
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.0e-272 943.7 963 55.0
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.1e-270 936.0 967 54.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.4e-268 928.7 805 61.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-245 853.6 749 59.1
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 3.8e-243 845.5 768 60.4
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 5.5e-242 841.6 953 51.2
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 8.8e-240 834.3 917 51.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.3e-230 803.9 935 48.1
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 3.2e-226 789.3 843 51.1
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.0e-223 780.0 892 48.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.0e-221 771.5 695 61.2
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.7e-214 750.4 1075 42.1
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.2e-206 723.4 702 57.3
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.3e-203 714.1 921 46.8
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.5e-191 674.1 751 51.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 3.0e-179 633.3 635 57.2
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.4e-167 592.8 673 52.5
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.6e-164 582.8 414 69.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-144 518.1 509 57.4
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.6e-138 495.4 401 64.8
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.0e-136 490.0 355 69.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.9e-136 489.2 709 44.6
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 9.7e-130 468.8 403 62.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.0e-123 448.7 563 48.0
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 3.9e-123 446.8 581 46.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.1e-117 428.7 397 56.2
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.5e-109 401.7 332 59.6
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.6e-103 381.7 290 66.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.5e-103 380.2 292 64.7
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 5.0e-94 350.1 302 59.6
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.5e-87 327.4 327 52.6
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 3.5e-71 274.2 207 67.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 8.3e-57 226.5 149 72.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.2e-56 223.0 139 72.7
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.0e-51 207.6 210 49.5
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.6e-47 195.7 127 71.7
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 6.9e-43 180.3 132 63.6
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.5e-34 151.0 160 50.0
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.5e-31 141.4 96 67.7
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-30 139.4 291 40.2
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.5e-29 135.2 110 61.8
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.8e-27 129.0 76 77.6
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.0e-26 125.6 85 68.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-20 106.3 66 72.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.7e-20 104.8 134 44.0
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.5e-18 99.4 243 33.3
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.1e-15 87.4 47 80.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.0e-14 85.1 61 63.9
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.3e-13 81.3 80 56.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.2e-10 73.2 46 71.7
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 5.9e-10 70.9 121 41.3
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 3.8e-09 68.2 68 48.5
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.6e-07 62.8 35 71.4
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 54.7
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 52.8
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.7e-07 62.0 53 58.5
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-06 59.7 71 46.5
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 8.8e-06 57.0 52 55.8


User provided reference genes

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