Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.4e-201 704.9 391 100.0
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.5e-71 274.2 431 43.6
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.0e-71 273.9 407 44.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.3e-71 273.1 424 44.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.7e-71 272.3 427 44.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 7.5e-71 271.9 413 42.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 7.5e-71 271.9 402 44.5
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.2e-70 270.4 409 43.3
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 4.8e-70 269.2 409 44.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.3e-70 268.9 426 43.9
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 6.3e-70 268.9 425 43.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.2e-70 268.5 414 45.2
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 8.2e-70 268.5 402 45.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.4e-69 267.7 411 43.6
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.8e-69 267.3 442 42.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 7.0e-69 265.4 397 45.3
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.2e-68 264.6 428 43.5
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 4.5e-68 262.7 401 43.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 7.7e-68 261.9 428 43.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.0e-67 261.5 397 45.3
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 3.8e-67 259.6 424 43.9
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.8e-67 259.6 390 44.4
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.5e-67 258.8 390 44.6
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.1e-66 258.1 390 44.1
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 7.2e-66 255.4 397 43.6
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 9.4e-66 255.0 416 42.8
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 9.4e-66 255.0 400 44.0
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 8.0e-65 251.9 427 42.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.8e-64 248.4 390 43.6
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.8e-62 243.4 414 42.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 6.3e-62 242.3 399 43.6
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 6.3e-62 242.3 423 41.6
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.1e-61 241.5 422 40.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.1e-61 239.6 405 43.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 5.4e-61 239.2 399 43.4
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.4e-61 239.2 420 39.5
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.5e-60 236.5 400 42.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 6.5e-59 232.3 423 39.5
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.9e-58 230.7 432 39.4
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.7e-57 226.9 419 40.6
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.6e-57 226.5 457 37.6
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.6e-57 226.5 402 39.1
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.0e-57 225.3 402 39.1
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 6.8e-56 222.2 412 40.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 8.8e-56 221.9 416 39.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.4e-55 219.5 422 39.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.3e-54 218.0 419 39.6
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.8e-54 216.9 332 44.3
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 4.9e-54 216.1 407 38.8
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 8.3e-54 215.3 418 39.7
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-53 213.8 411 38.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-52 211.5 400 36.2
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.7e-52 210.3 404 38.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.5e-52 209.5 416 37.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.5e-52 209.5 410 39.0
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 5.9e-52 209.1 389 35.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 5.9e-52 209.1 404 38.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-51 208.4 411 37.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.8e-49 200.3 400 37.8
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.3e-48 197.2 421 35.6
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.2e-48 196.1 313 43.1
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.2e-48 196.1 313 43.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.2e-48 196.1 401 37.2
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-47 194.9 401 38.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.0e-47 194.1 400 38.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.6e-47 193.7 439 36.9
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.7e-47 192.6 402 35.8
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 9.8e-47 191.8 402 38.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.2e-46 190.7 402 35.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.4e-45 187.2 402 34.8
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-44 184.9 402 36.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.7e-44 183.7 431 34.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.5e-44 183.3 404 35.1
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.3e-43 181.4 457 33.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.0e-43 179.5 402 35.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-42 177.9 397 33.8
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.3e-42 175.6 392 34.4
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 7.3e-42 175.6 402 34.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-41 174.9 403 33.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-41 174.9 420 33.1
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 6.2e-41 172.6 421 36.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.0e-40 169.9 424 32.8
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.6e-39 167.2 407 34.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.4e-39 166.8 404 33.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.4e-39 166.8 404 35.4
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 7.5e-39 165.6 164 56.7
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.1e-37 161.8 393 32.6
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.1e-37 161.8 398 34.9
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.4e-37 161.4 395 32.4
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.4e-37 161.4 435 32.6
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.1e-37 159.8 424 34.2
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.0e-37 159.1 203 48.3
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.3e-35 154.8 388 33.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.3e-35 154.1 314 38.2
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.0e-35 152.9 396 31.8
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.5e-34 151.4 396 32.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.6e-34 149.4 401 30.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 9.5e-34 148.7 230 44.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.2e-33 148.3 410 32.9
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.2e-33 148.3 227 44.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.7e-33 146.4 402 33.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 4.7e-33 146.4 401 33.2
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.2e-33 146.0 401 31.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.2e-33 146.0 401 33.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 8.1e-33 145.6 404 32.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-32 145.2 393 31.0
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.0e-32 143.3 489 32.1
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.2e-32 142.9 425 33.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 5.2e-32 142.9 335 34.0
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 6.8e-32 142.5 397 33.5
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.6e-31 140.6 424 31.1
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 9.8e-31 138.7 395 33.4
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 9.8e-31 138.7 398 31.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.7e-30 136.7 388 31.4
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 8.3e-30 135.6 148 54.1
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-29 135.2 401 30.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-29 135.2 400 32.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.1e-29 135.2 400 32.0
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-29 134.8 401 30.7
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.4e-29 134.8 401 30.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.2e-29 133.7 398 32.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.4e-29 132.9 508 30.7
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 9.2e-29 132.1 399 31.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.2e-28 131.7 390 31.5
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.6e-28 131.3 379 31.4
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-28 131.0 213 41.3
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.7e-28 130.6 379 31.9
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.3e-26 123.6 188 43.1
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 4.3e-26 123.2 138 52.9
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.6e-26 122.9 400 30.2
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.6e-25 121.3 155 47.1
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-25 120.9 395 29.6
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.6e-25 120.2 206 40.8
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 8.1e-25 119.0 176 40.9
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 8.1e-25 119.0 176 40.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.8e-24 117.9 143 49.7
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.1e-24 117.1 421 29.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 5.2e-24 116.3 421 29.9
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 5.2e-24 116.3 421 29.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 8.9e-24 115.5 143 51.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-23 115.2 141 48.9
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-23 115.2 141 48.9
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.5e-23 114.8 414 28.5
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.3e-22 111.7 160 46.2
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.9e-22 110.5 176 39.8
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.9e-22 110.5 176 39.8
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.9e-22 110.5 176 39.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.9e-22 110.5 171 44.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 4.9e-22 109.8 395 28.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 6.4e-22 109.4 143 46.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 6.4e-22 109.4 116 50.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 9.2e-21 105.5 176 43.2
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-20 104.8 105 58.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.8e-20 102.4 457 27.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 7.8e-20 102.4 170 42.9
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.0e-19 102.1 172 39.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 3.0e-19 100.5 142 45.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 8.6e-19 99.0 192 35.4
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 7.3e-18 95.9 105 53.3
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.1e-16 92.0 144 36.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 3.1e-16 90.5 389 25.7
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.4e-13 80.9 277 29.2
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.7e-11 74.7 215 30.2
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.1e-11 73.2 311 25.7
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.6e-11 72.8 43 83.7
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 4.3e-10 70.1 160 30.6
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 9.6e-10 68.9 274 27.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 8.1e-09 65.9 175 30.9
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 5.8e-07 59.7 117 34.2
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 7.6e-07 59.3 117 35.0
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 2.9e-06 57.4 117 33.3


User provided reference genes

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