Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 6.4e-185 650.6 326 100.0
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 2.2e-124 449.5 322 68.6
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 1.9e-120 436.4 325 66.5
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 5.5e-120 434.9 295 71.2
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 9.5e-120 434.1 325 67.1
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 9.5e-120 434.1 281 74.4
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 1.6e-119 433.3 321 66.7
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.8e-118 429.9 308 68.2
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 1.5e-117 426.8 296 69.9
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 2.0e-117 426.4 327 64.8
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 4.4e-117 425.2 326 65.0
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 3.7e-116 422.2 300 67.7
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 3.7e-116 422.2 341 63.6
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 8.3e-116 421.0 319 64.9
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 8.3e-116 421.0 292 68.2
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 8.3e-116 421.0 300 67.3
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 4.1e-115 418.7 308 66.9
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 9.2e-115 417.5 292 67.1
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 2.0e-114 416.4 292 66.1
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 5.9e-114 414.8 306 66.7
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 5.9e-114 414.8 328 64.0
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.7e-113 413.3 313 64.9
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 5.0e-113 411.8 317 64.4
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 5.6e-112 408.3 311 64.3
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.2e-111 407.1 321 62.9
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 2.8e-111 406.0 322 63.0
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 3.6e-111 405.6 324 62.0
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 4.7e-111 405.2 324 64.8
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 8.0e-111 404.4 321 62.3
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 1.5e-109 400.2 323 62.2
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 1.5e-109 400.2 292 65.8
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 3.4e-109 399.1 308 65.3
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 3.4e-109 399.1 323 60.4
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 9.8e-109 397.5 324 63.0
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.9e-108 396.0 305 62.6
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 3.7e-108 395.6 329 61.1
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 8.3e-108 394.4 303 64.0
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 1.1e-107 394.0 286 66.8
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 2.4e-107 392.9 322 59.3
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 1.6e-106 390.2 297 61.6
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 2.0e-106 389.8 291 63.2
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 3.3e-104 382.5 323 60.7
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 4.7e-103 378.6 317 58.7
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 7.5e-101 371.3 324 55.9
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.5e-101 371.3 293 61.1
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.9e-100 369.4 319 59.2
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 2.9e-100 369.4 327 56.9
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.9e-100 368.6 271 66.8
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 1.1e-99 367.5 327 56.3
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.4e-99 366.3 287 65.2
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 7.8e-98 361.3 319 55.2
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 2.3e-97 359.8 318 54.7
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 2.3e-97 359.8 321 54.8
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 3.0e-97 359.4 321 56.1
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 3.0e-97 359.4 346 55.8
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.1e-96 357.5 266 66.5
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 2.5e-96 356.3 305 57.4
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 2.5e-96 356.3 325 54.2
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 2.5e-96 356.3 320 55.3
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 7.3e-96 354.8 320 54.7
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 7.3e-96 354.8 318 55.7
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 2.8e-95 352.8 321 54.5
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 2.8e-95 352.8 316 56.0
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 8.9e-94 347.8 313 54.6
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 1.2e-93 347.4 313 54.6
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 2.0e-93 346.7 301 60.5
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 5.8e-93 345.1 313 54.6
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 5.8e-93 345.1 350 54.3
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 5.8e-93 345.1 321 53.0
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 2.2e-92 343.2 278 65.1
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 6.4e-92 341.7 299 56.5
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.6e-90 337.0 305 56.4
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 4.6e-90 335.5 301 59.1
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 3.0e-89 332.8 308 57.8
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 6.6e-89 331.6 275 61.1
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.1e-86 324.3 322 52.5
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 5.6e-80 302.0 303 55.4
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 6.2e-79 298.5 208 68.3
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.3e-76 290.8 210 67.1
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 4.6e-74 282.3 210 63.3
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.7e-73 280.4 204 65.2
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 3.3e-72 276.2 214 61.7
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 3.6e-71 272.7 328 50.0
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 2.0e-69 266.9 322 40.4
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 4.2e-67 259.2 210 61.4
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.6e-66 257.3 282 51.1
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 7.4e-64 248.4 236 55.5
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 2.0e-61 240.4 199 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 4.9e-60 235.7 292 44.9
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.2e-53 214.5 286 45.1
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 4.5e-53 212.6 189 59.8
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.9e-48 197.2 289 41.9
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 7.4e-48 195.3 331 39.3
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 5.3e-46 189.1 210 45.2
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 6.5e-44 182.2 121 66.9
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.5e-37 161.0 125 59.2
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 1.3e-36 157.9 140 61.4
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.0e-33 148.3 118 62.7
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 1.0e-33 148.3 115 65.2
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 1.8e-33 147.5 294 31.3
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 5.1e-33 146.0 95 70.5
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 3.7e-31 139.8 121 61.2
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 5.3e-30 136.0 90 70.0
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 2.5e-27 127.1 181 44.2
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 3.2e-27 126.7 78 71.8
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.1e-22 111.7 159 33.3
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 1.4e-22 111.3 80 58.8
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 3.1e-22 110.2 284 27.5
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.3e-22 109.4 89 61.8
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 4.5e-21 106.3 89 60.7
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 3.0e-17 93.6 84 57.1
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 5.7e-16 89.4 65 66.2
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.5e-11 74.7 155 34.2
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.5e-11 74.7 155 34.2
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.2e-11 72.4 155 33.5
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.3e-07 61.6 44 68.2
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 6.3e-07 59.3 49 61.2
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 8.3e-07 58.9 46 63.0


User provided reference genes

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