Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.4e-109 399.8 229 100.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 8.9e-32 141.4 234 45.7
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.5e-26 123.2 224 42.0
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 7.3e-26 121.7 225 42.2
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.6e-25 120.6 238 39.9
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-23 114.0 236 39.4
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.0e-23 113.6 235 38.3
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 9.9e-23 111.3 224 41.1
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 2.2e-22 110.2 113 61.1
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.7e-22 109.4 233 44.2
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 4.9e-22 109.0 213 41.3
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 6.4e-22 108.6 227 39.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 6.4e-22 108.6 227 39.2
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 8.3e-22 108.2 217 41.5
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.4e-21 107.5 212 40.1
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.4e-21 106.7 145 49.7
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 3.2e-21 106.3 91 65.9
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 5.4e-21 105.5 113 54.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 7.1e-21 105.1 238 39.9
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.2e-20 104.4 115 53.0
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.2e-20 104.4 224 42.9
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.6e-20 104.0 108 59.3
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.1e-20 103.6 118 55.9
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.1e-20 103.6 118 55.9
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.1e-20 103.6 118 55.9
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.7e-20 103.2 122 52.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.5e-20 102.8 107 59.8
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 4.6e-20 102.4 122 53.3
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.0e-19 101.3 103 58.3
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.3e-19 100.9 118 55.1
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.3e-19 100.9 100 59.0
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.7e-19 100.5 123 51.2
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.7e-19 100.5 78 71.8
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 2.3e-19 100.1 139 49.6
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 2.3e-19 100.1 121 52.1
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 2.3e-19 100.1 78 71.8
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.9e-19 99.4 137 45.3
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.9e-19 99.4 105 57.1
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 5.1e-19 99.0 81 65.4
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 5.1e-19 99.0 212 36.8
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 6.6e-19 98.6 125 53.6
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 8.6e-19 98.2 212 36.8
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.1e-18 97.8 104 57.7
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.5e-18 97.4 89 61.8
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.5e-18 97.4 81 65.4
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.9e-18 97.1 75 66.7
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.9e-18 97.1 96 61.5
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.5e-18 96.7 74 67.6
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.5e-18 96.7 81 69.1
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.5e-18 96.7 212 36.3
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.3e-18 96.3 129 45.7
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.3e-18 96.3 129 45.7
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.3e-18 95.9 113 54.0
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 5.6e-18 95.5 153 46.4
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 5.6e-18 95.5 221 35.7
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 5.6e-18 95.5 142 48.6
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 5.6e-18 95.5 253 37.5
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 7.3e-18 95.1 221 37.6
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.2e-17 94.4 214 39.3
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.6e-17 94.0 209 40.2
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.6e-17 94.0 92 63.0
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 2.1e-17 93.6 211 38.9
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.1e-17 93.6 81 64.2
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 2.8e-17 93.2 206 39.3
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 2.8e-17 93.2 206 39.3
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 2.8e-17 93.2 84 66.7
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.8e-17 93.2 93 58.1
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 3.6e-17 92.8 123 48.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 3.6e-17 92.8 123 46.3
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.7e-17 92.4 84 63.1
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.2e-17 92.0 113 48.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.2e-17 92.0 80 61.2
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 8.1e-17 91.7 221 38.0
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.8e-16 90.5 85 61.2
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.4e-16 90.1 205 33.2
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 2.4e-16 90.1 78 64.1
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 2.4e-16 90.1 78 64.1
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 3.1e-16 89.7 92 58.7
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 3.1e-16 89.7 92 58.7
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.1e-16 89.7 77 62.3
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.1e-16 89.7 93 55.9
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 4.0e-16 89.4 141 47.5
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 4.0e-16 89.4 141 47.5
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 5.2e-16 89.0 113 49.6
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 5.2e-16 89.0 85 61.2
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 6.8e-16 88.6 70 67.1
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.8e-16 88.6 103 50.5
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.8e-16 88.6 147 42.2
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 8.9e-16 88.2 219 34.7
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.2e-15 87.8 124 46.0
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 1.5e-15 87.4 82 57.3
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.0e-15 87.0 70 65.7
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 2.6e-15 86.7 82 57.3
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.4e-15 86.3 112 49.1
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.4e-15 86.3 83 60.2
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 3.4e-15 86.3 82 61.0
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.4e-15 86.3 79 58.2
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 7.6e-15 85.1 217 33.2
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 9.9e-15 84.7 223 33.6
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.7e-14 84.0 82 58.5
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-14 83.2 74 64.9
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.9e-14 83.2 74 64.9
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.9e-14 83.2 69 59.4
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 3.8e-14 82.8 81 58.0
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 3.8e-14 82.8 81 59.3
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 4.9e-14 82.4 84 57.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.9e-14 82.4 135 41.5
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.4e-14 82.0 94 56.4
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 8.4e-14 81.6 99 49.5
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.1e-13 81.3 129 45.7
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.2e-13 79.7 103 49.5
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 7.1e-13 78.6 81 55.6
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 7.1e-13 78.6 81 58.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.2e-12 77.8 116 42.2
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.2e-12 77.8 82 51.2
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.2e-12 77.8 91 53.8
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.6e-12 77.4 97 50.5
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.6e-12 77.4 72 58.3
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.6e-12 75.9 79 58.2
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.0e-12 75.5 68 58.8
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.8e-12 75.1 137 42.3
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.8e-12 75.1 225 32.4
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.0e-11 74.7 99 47.5
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.3e-11 74.3 72 59.7
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.7e-11 73.9 83 54.2
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.7e-11 73.9 89 49.4
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.7e-11 73.9 60 65.0
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.3e-11 73.6 84 50.0
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.3e-11 73.6 104 46.2
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 3.9e-11 72.8 99 48.5
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 3.9e-11 72.8 71 52.1
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 5.1e-11 72.4 66 57.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 5.1e-11 72.4 70 54.3
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 5.1e-11 72.4 108 47.2
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.5e-10 70.9 220 33.2
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.9e-10 70.5 91 45.1
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 7.3e-10 68.6 171 38.0
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 9.6e-10 68.2 50 66.0
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.3e-09 67.8 56 64.3
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.6e-09 67.4 81 50.6
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 2.8e-09 66.6 91 48.4
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 3.6e-09 66.2 125 37.6
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 3.1e-08 63.2 77 48.1
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 4.0e-08 62.8 54 59.3
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 4.0e-08 62.8 80 52.5
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 5.3e-08 62.4 59 55.9
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 9.0e-08 61.6 68 51.5
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.4e-07 59.7 221 30.3
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 2.9e-06 56.6 218 30.3


User provided reference genes

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