Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 6.6e-84 313.9 152 100.0
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.4e-65 252.3 140 83.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 5.3e-65 251.1 139 85.6
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 3.4e-64 248.4 139 82.7
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 3.4e-64 248.4 139 84.2
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 7.6e-64 247.3 139 82.7
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 2.2e-63 245.7 139 82.0
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.9e-63 245.4 139 80.6
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-63 245.4 139 80.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-63 245.4 139 80.6
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 5.0e-63 244.6 137 83.2
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 8.5e-63 243.8 137 82.5
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.5e-62 242.3 139 79.9
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 5.5e-62 241.1 141 79.4
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 7.2e-62 240.7 139 79.1
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 9.3e-62 240.4 138 79.7
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.6e-61 239.6 141 78.7
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.1e-61 239.2 144 77.8
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 2.1e-61 239.2 139 79.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-61 238.8 141 78.7
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.6e-61 238.4 139 78.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.6e-61 238.0 139 79.9
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 6.1e-61 237.7 137 79.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 7.9e-61 237.3 141 78.0
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 7.9e-61 237.3 139 79.1
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 7.9e-61 237.3 138 81.9
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 7.9e-61 237.3 138 77.5
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.3e-60 236.5 138 79.0
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.8e-60 236.1 141 76.6
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-60 236.1 141 76.6
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.3e-60 235.7 137 78.8
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.9e-60 235.0 155 72.3
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 5.1e-60 234.6 140 77.1
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 6.7e-60 234.2 137 78.1
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 6.7e-60 234.2 138 76.1
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.7e-60 234.2 141 76.6
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 8.7e-60 233.8 137 78.8
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 8.7e-60 233.8 138 79.0
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.9e-59 232.6 140 75.7
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.9e-59 232.6 139 76.3
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 2.5e-59 232.3 139 77.7
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.5e-59 232.3 138 79.7
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.5e-59 232.3 138 79.0
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 3.3e-59 231.9 139 74.1
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 5.7e-59 231.1 139 78.4
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.4e-59 230.7 138 76.8
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.3e-58 229.9 138 78.3
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.6e-58 229.6 138 74.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 2.2e-58 229.2 138 76.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.2e-58 229.2 138 76.8
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.2e-58 229.2 138 76.8
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 2.8e-58 228.8 134 77.6
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 4.8e-58 228.0 138 77.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.3e-58 227.6 138 76.1
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 8.2e-58 227.3 167 66.5
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-57 226.9 160 69.4
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.4e-57 226.5 135 75.6
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.8e-57 226.1 141 74.5
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 3.1e-57 225.3 137 77.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 4.1e-57 224.9 141 74.5
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 6.9e-57 224.2 138 74.6
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 6.9e-57 224.2 142 73.9
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 6.9e-57 224.2 137 75.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.2e-56 223.4 140 75.7
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.5e-56 223.0 138 72.5
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.0e-56 222.6 140 73.6
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 4.5e-56 221.5 138 73.2
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 4.5e-56 221.5 139 74.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.3e-55 219.9 137 75.2
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.2e-55 219.2 139 73.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.2e-55 219.2 139 73.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.2e-55 219.2 140 72.9
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 3.8e-55 218.4 138 75.4
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 5.0e-55 218.0 137 73.7
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 8.5e-55 217.2 138 74.6
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.4e-54 216.5 141 73.0
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.4e-54 216.5 137 73.7
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.5e-54 215.7 128 75.8
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.2e-54 214.9 140 70.7
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.2e-54 214.9 140 70.7
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 9.4e-54 213.8 139 72.7
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 140 70.0
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.1e-53 212.6 138 72.5
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.0e-52 210.3 138 72.5
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.0e-52 210.3 138 72.5
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.8e-52 209.5 115 82.6
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.3e-52 209.1 138 73.9
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 3.9e-52 208.4 139 69.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 3.9e-52 208.4 137 70.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 5.1e-52 208.0 205 54.6
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 6.7e-52 207.6 138 69.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 6.7e-52 207.6 137 72.3
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 8.8e-52 207.2 116 79.3
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.1e-51 206.8 137 72.3
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.0e-51 206.1 137 67.2
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 5.7e-51 204.5 138 66.7
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 9.7e-51 203.8 138 70.3
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.3e-50 203.4 142 66.9
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.3e-50 203.4 139 68.3
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.7e-50 203.0 138 65.9
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.7e-50 203.0 138 67.4
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.7e-50 203.0 137 66.4
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.2e-50 202.6 138 66.7
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.8e-50 201.4 138 68.8
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 6.3e-50 201.1 139 65.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.4e-49 199.9 137 65.0
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-49 199.5 116 77.6
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.3e-49 198.0 116 79.3
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 5.3e-49 198.0 140 65.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.3e-49 198.0 134 66.4
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.3e-47 193.4 138 67.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 9.4e-46 187.2 139 61.9
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.1e-45 186.0 115 75.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.1e-45 186.0 115 75.7
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.1e-45 186.0 111 78.4
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.7e-45 185.7 138 62.3
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.7e-45 185.7 138 64.5
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.6e-45 185.3 139 61.9
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 3.6e-45 185.3 139 61.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.6e-45 185.3 137 62.8
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.7e-45 184.9 116 70.7
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.4e-44 183.3 138 63.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.4e-44 183.3 139 56.8
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.3e-44 182.6 134 58.2
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.7e-44 181.0 138 62.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-43 180.3 138 59.4
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.6e-43 179.1 115 72.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 3.3e-43 178.7 112 72.3
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-42 176.8 114 71.1
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.7e-42 176.4 111 72.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.6e-40 169.1 139 59.0
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.5e-40 168.3 101 74.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 5.9e-40 167.9 138 60.1
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.6e-37 159.8 134 56.7
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-33 146.0 125 56.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-33 146.0 125 56.0
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.5e-30 136.7 79 79.7
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.6e-29 132.1 127 50.4
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 9.8e-27 124.0 99 59.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 9.8e-27 124.0 99 58.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.3e-26 123.6 126 46.0
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.7e-26 123.2 127 49.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 4.8e-26 121.7 139 45.3
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 7.7e-24 114.4 148 43.9
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.0e-23 114.0 139 41.7
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.3e-23 113.6 92 58.7
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.2e-23 112.8 140 43.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.5e-23 111.3 134 41.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 5.5e-22 108.2 133 40.6
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 2.8e-21 105.9 135 40.7
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.0e-20 102.4 137 39.4
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.5e-16 89.0 54 74.1
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 7.8e-16 87.8 65 60.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.0e-15 87.4 59 64.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 2.9e-15 85.9 135 36.3
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 6.6e-15 84.7 112 41.1
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.5e-14 83.6 99 47.5
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-14 83.2 52 73.1
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-14 83.2 52 73.1
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-14 83.2 52 73.1
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 5.6e-14 81.6 52 71.2
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 9.5e-14 80.9 87 46.0
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 5.7e-11 71.6 114 39.5
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.4e-09 66.2 49 59.2
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 2.5e-06 56.2 32 84.4
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 5.6e-06 55.1 41 56.1


User provided reference genes

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