Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.4e-293 1012.3 538 100.0
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 4.7e-249 864.4 542 83.8
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 8.8e-248 860.1 539 83.1
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 5.9e-244 847.4 536 81.2
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 5.5e-242 840.9 498 85.7
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 1.6e-241 839.3 500 85.0
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.6e-241 839.3 536 79.9
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 3.6e-241 838.2 527 81.8
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 5.2e-240 834.3 536 80.0
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 5.2e-240 834.3 536 80.2
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 1.2e-239 833.2 500 85.4
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.2e-239 833.2 536 80.6
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.5e-239 832.8 501 85.6
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.5e-239 832.8 536 80.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 2.0e-239 832.4 536 80.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.6e-239 832.0 500 84.2
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.7e-238 829.3 520 81.2
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-238 829.3 536 79.7
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 8.3e-238 827.0 536 79.5
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 8.3e-238 827.0 537 80.4
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.4e-237 826.2 536 79.1
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 4.1e-237 824.7 536 79.5
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.6e-236 822.8 548 78.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 3.5e-236 821.6 533 78.8
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.3e-235 819.7 540 80.0
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-235 819.7 536 78.7
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 2.9e-235 818.5 552 77.7
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 3.8e-235 818.1 530 80.2
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 5.0e-235 817.8 539 79.2
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 5.0e-235 817.8 536 78.9
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 8.6e-235 817.0 533 80.1
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.5e-234 816.2 538 79.0
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 5.5e-234 814.3 538 79.0
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 5.5e-234 814.3 505 82.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.6e-233 812.8 536 79.1
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.8e-233 812.0 528 80.5
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 2.3e-232 808.9 501 82.8
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 6.8e-232 807.4 546 78.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 3.4e-231 805.1 545 77.4
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 3.7e-230 801.6 532 78.6
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.5e-226 789.6 532 77.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 7.3e-226 787.3 544 75.4
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.2e-225 786.6 551 75.1
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 2.1e-225 785.8 538 75.1
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.0e-224 783.5 527 77.6
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 6.8e-224 780.8 534 75.7
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.2e-223 780.0 538 75.1
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 2.0e-223 779.2 501 79.4
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.6e-223 778.9 534 75.8
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.6e-223 778.9 541 75.8
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 9.8e-223 776.9 531 76.3
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 2.2e-222 775.8 536 77.1
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 2.9e-222 775.4 531 76.1
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 6.4e-222 774.2 531 76.1
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.2e-221 771.9 527 75.5
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 4.1e-221 771.5 501 78.6
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 3.5e-220 768.5 539 76.4
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 4.6e-220 768.1 560 72.1
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 6.0e-220 767.7 509 78.0
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.0e-219 766.9 526 75.1
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.9e-219 765.0 500 80.0
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 5.0e-219 764.6 550 73.8
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 6.6e-219 764.2 525 74.3
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.3e-218 761.9 527 76.3
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 4.3e-218 761.5 500 77.2
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 5.6e-218 761.1 543 73.3
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 1.6e-217 759.6 536 73.5
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.6e-217 759.6 501 77.2
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 2.1e-217 759.2 537 74.1
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.8e-216 756.1 527 75.7
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.2e-216 754.6 527 75.3
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 8.9e-216 753.8 525 74.9
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 3.4e-215 751.9 539 75.3
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 2.9e-214 748.8 541 73.9
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.1e-212 742.7 532 74.4
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 7.8e-212 740.7 500 77.8
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.9e-210 736.1 623 66.1
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 5.6e-210 734.6 502 76.7
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.6e-209 731.9 544 71.0
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.4e-208 729.9 501 75.6
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.8e-208 729.6 500 74.8
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 2.2e-206 722.6 482 77.8
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 8.3e-206 720.7 619 64.9
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.5e-199 699.9 501 73.5
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 4.0e-192 675.2 500 68.0
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 3.4e-191 672.2 500 71.8
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 7.6e-191 671.0 529 69.2
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 4.9e-190 668.3 530 66.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 6.4e-190 667.9 502 69.1
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.4e-189 666.0 592 62.0
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.5e-188 662.1 592 62.7
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 3.6e-185 652.1 424 80.0
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.4e-184 649.4 430 78.1
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.6e-180 636.7 495 64.4
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.6e-180 636.7 495 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 7.9e-172 607.8 444 68.0
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 5.1e-171 605.1 472 69.7
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 5.8e-167 591.7 520 58.3
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.2e-166 589.7 399 76.4
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 3.3e-162 575.9 486 60.9
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 2.5e-154 549.7 368 78.5
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 2.2e-153 546.6 388 75.0
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 3.7e-153 545.8 360 76.9
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.4e-144 517.3 331 79.5
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 2.8e-129 466.5 321 75.7
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 6.1e-116 422.2 255 82.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.0e-115 421.4 255 82.4
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.7e-110 404.1 463 54.0
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 2.5e-109 400.2 498 44.8
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 5.8e-106 389.0 495 43.2
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.8e-100 370.2 240 78.8
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.9e-96 357.5 478 43.5
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.4e-83 313.9 332 56.6
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 2.4e-67 260.8 173 75.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 4.2e-56 223.4 503 35.8
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-55 221.1 511 35.2
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 5.3e-51 206.5 199 57.8
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.9e-48 198.0 478 34.7
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.8e-43 181.4 112 82.1
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-40 171.4 293 41.3
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.5e-40 171.0 115 76.5
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 3.7e-36 157.1 466 31.8
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-34 149.8 489 32.1
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 5.1e-30 136.7 469 30.7
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 3.3e-29 134.0 298 36.6
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-28 131.0 277 38.3
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 3.5e-26 124.0 86 67.4
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-25 121.7 331 34.4
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 6.5e-25 119.8 300 33.0
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-23 113.6 238 37.8
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 8.8e-22 109.4 210 38.6
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-21 108.2 353 31.4
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.7e-20 105.1 265 31.7
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-19 101.7 158 40.5
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 7.0e-19 99.8 209 37.8
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 9.1e-19 99.4 59 79.7
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.2e-18 99.0 74 62.2
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-18 96.7 158 39.2
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 7.7e-18 96.3 208 37.5
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 3.8e-17 94.0 239 31.0
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.6e-15 88.6 397 29.0
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.6e-15 88.6 358 28.8
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-14 85.5 157 40.8
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 4.0e-14 84.0 398 28.6
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 3.7e-12 77.4 305 29.5
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 1.4e-11 75.5 249 32.5
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 1.4e-06 58.9 48 64.6
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 2.3e-06 58.2 45 66.7
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 5.2e-06 57.0 32 78.1
FvH4_2g02220 Fragaria vesca HOM05D027463 ORTHO05D035425 8.8e-06 56.2 44 65.9


User provided reference genes

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