Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1979.5 1040 100.0
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1256.5 1010 65.1
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1229.2 1042 63.2
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1215.3 1047 62.7
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1213.0 1144 58.3
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1206.4 1019 62.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1022 63.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1202.6 1041 61.9
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1202.2 1029 62.9
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1201.8 1049 60.8
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1200.7 1048 62.3
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1199.1 1039 62.0
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1197.6 1043 62.3
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1192.6 1040 61.3
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1184.9 1039 62.4
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1184.1 1032 61.5
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1183.3 1030 61.5
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1176.4 1042 61.3
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1175.2 1031 62.5
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1172.5 1041 61.1
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1171.0 1040 60.0
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1166.4 1030 60.0
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1163.7 1042 60.7
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1161.0 1012 60.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1159.1 994 61.7
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1156.7 1018 60.7
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1151.3 932 65.1
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1150.6 1039 60.5
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1150.2 1047 60.5
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1149.4 987 62.0
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1149.0 1040 59.5
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1147.9 1033 59.6
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1146.3 1005 61.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1145.6 1039 58.2
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1143.6 1018 60.0
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1136.3 1017 59.5
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1018 58.7
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1034 58.9
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1133.6 1033 58.6
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1133.2 1044 60.7
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1132.1 968 60.7
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1129.8 1025 58.1
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1129.4 1012 60.0
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1129.0 1050 59.6
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1127.9 1039 59.8
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1125.9 1032 58.0
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1125.5 1022 61.3
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1119.0 1045 59.1
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1114.8 1012 60.2
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1114.8 1045 59.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1113.2 1039 58.5
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1112.1 1051 58.0
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1105.5 960 62.0
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1101.7 1057 58.5
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1099.3 1056 58.6
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1096.3 1003 58.1
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1094.0 1045 56.8
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1094.0 1003 58.0
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1093.6 1064 57.2
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1090.5 1050 57.4
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1052 58.0
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1052 58.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1086.6 1050 57.1
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1086.2 1029 56.9
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1084.3 1014 57.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1083.9 1043 57.2
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1082.0 1036 57.7
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1078.9 1050 57.2
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1078.2 1060 57.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 2.4e-310 1068.9 1043 57.9
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 7.0e-310 1067.4 1036 56.7
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 2.0e-309 1065.8 1048 57.0
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 4.6e-309 1064.7 1048 57.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 1.0e-308 1063.5 1017 57.2
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 1.1e-307 1060.1 1035 55.4
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 5.6e-307 1057.7 1073 56.0
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 2.8e-306 1055.4 1030 56.9
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 5.2e-305 1051.2 1033 55.6
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 3.2e-302 1042.0 1036 55.3
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 9.2e-302 1040.4 1051 53.7
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 3.9e-300 1035.0 1063 54.1
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.6e-296 1022.3 1049 54.5
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 7.1e-294 1014.2 1033 54.4
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 5.6e-283 978.0 1078 52.7
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.9e-279 965.7 842 59.1
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 8.4e-271 937.6 1179 48.2
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.8e-266 922.5 740 65.4
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.5e-264 916.8 759 63.1
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.9e-263 911.8 751 63.1
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 3.5e-261 905.6 749 62.1
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 5.8e-256 888.3 751 61.8
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 1.0e-255 887.5 924 53.8
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 2.2e-255 886.3 781 60.8
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 3.2e-254 882.5 1058 50.7
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 4.3e-251 872.1 1034 50.2
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 4.8e-218 762.3 558 71.3
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 5.9e-216 755.4 633 61.0
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.7e-208 729.9 1007 44.2
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.7e-199 700.7 561 63.8
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 4.1e-193 679.5 618 58.4
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.2e-189 667.9 1047 40.5
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 3.7e-186 656.4 667 53.8
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 2.7e-176 623.6 901 42.0
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.6e-173 613.2 718 49.0
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 7.1e-161 572.4 917 38.2
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 4.6e-160 569.7 989 37.8
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.7e-149 533.5 428 64.3
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.2e-145 520.4 668 49.1
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.2e-91 342.4 318 56.3
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 8.0e-88 329.7 249 69.5
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 6.1e-80 303.5 809 32.5
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 9.2e-76 289.7 425 41.2
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 6.0e-75 287.0 261 57.9
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 1.3e-74 285.8 239 65.3
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 3.3e-73 281.2 958 27.0
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.6e-72 278.9 400 41.0
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 4.6e-67 260.8 204 62.7
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 8.6e-66 256.5 347 42.1
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 9.9e-62 243.0 237 56.5
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 3.7e-61 241.1 806 28.4
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 8.3e-61 240.0 199 60.3
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 4.9e-53 214.2 257 51.0
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.3e-50 206.1 229 52.0
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 7.9e-43 180.3 139 69.1
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.6e-40 172.6 278 46.0
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.2e-35 156.4 108 72.2
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 6.5e-21 107.5 784 22.3
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 1.6e-19 102.8 86 59.3
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.1e-19 102.4 64 75.0
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 6.7e-18 97.4 68 69.1
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 4.8e-16 91.3 68 66.2
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 2.0e-14 85.9 78 61.5
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.6e-14 85.5 70 57.1
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.9e-11 73.9 57 63.2
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 7.9e-11 73.9 52 73.1
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 6.3e-08 64.3 46 65.2
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 1.4e-07 63.2 90 41.1


User provided reference genes

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