Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 2.4e-56 222.2 140 100.0
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 5.1e-22 108.2 73 68.5
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 4.3e-21 105.1 95 56.8
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 7.4e-21 104.4 94 62.8
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 1.6e-20 103.2 101 56.4
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 2.1e-20 102.8 96 60.4
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 6.2e-20 101.3 93 58.1
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 1.4e-19 100.1 77 62.3
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 9.0e-19 97.4 96 53.1
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 2.0e-18 96.3 95 52.6
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 2.6e-18 95.9 97 57.7
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 4.5e-18 95.1 96 53.1
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 5.8e-18 94.7 96 50.0
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 5.8e-18 94.7 97 48.5
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 7.6e-18 94.4 94 51.1
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 1.0e-17 94.0 135 43.7
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 2.2e-17 92.8 74 58.1
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 3.8e-17 92.0 78 62.8
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 4.9e-17 91.7 96 50.0
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 6.5e-17 91.3 99 46.5
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 6.5e-17 91.3 75 64.0
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 8.4e-17 90.9 73 58.9
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 1.4e-16 90.1 72 61.1
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 5.5e-16 88.2 100 50.0
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 5.5e-16 88.2 88 51.1
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 9.3e-16 87.4 91 51.6
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 9.3e-16 87.4 83 51.8
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.2e-15 87.0 75 56.0
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 2.7e-15 85.9 106 47.2
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 4.6e-15 85.1 90 48.9
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 6.0e-15 84.7 102 49.0
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 6.0e-15 84.7 78 56.4
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 1.0e-14 84.0 96 49.0
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 1.0e-14 84.0 99 47.5
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 1.3e-14 83.6 92 47.8
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 1.8e-14 83.2 72 55.6
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 1.8e-14 83.2 72 55.6
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 3.9e-14 82.0 78 48.7
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 5.1e-14 81.6 94 46.8
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 8.7e-14 80.9 80 51.2
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 1.1e-13 80.5 105 42.9
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 1.1e-13 80.5 75 56.0
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 1.5e-13 80.1 105 41.9
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.5e-13 80.1 75 53.3
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 1.5e-13 80.1 65 58.5
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 5.7e-13 78.2 111 45.0
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 4.8e-12 75.1 91 44.0
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 5.3e-11 71.6 115 40.9
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 1.2e-10 70.5 103 43.7
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 1.5e-10 70.1 70 44.3
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 2.6e-10 69.3 90 44.4
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 4.5e-10 68.6 76 40.8
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 4.5e-10 68.6 90 45.6
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 1.7e-09 66.6 39 69.2
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.7e-09 66.6 147 33.3
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 1.1e-08 63.9 84 44.0
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 1.4e-08 63.5 87 42.5
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 2.5e-08 62.8 91 40.7
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 1.6e-07 60.1 90 40.0
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 2.1e-07 59.7 84 38.1
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 2.7e-07 59.3 93 37.6
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 2.7e-07 59.3 69 40.6
Medtr0077s0010 Medicago truncatula HOM05D002803 ORTHO05D003089 4.6e-07 58.5 87 40.2
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 4.6e-07 58.5 86 36.0
HanXRQChr02g0042791 Helianthus annuus HOM05D002803 ORTHO05D003089 6.1e-07 58.2 90 37.8
FvH4_5g12760 Fragaria vesca HOM05D002803 ORTHO05D003089 7.9e-07 57.8 78 41.0
FAN18G3348 Fragaria x ananassa HOM05D002803 ORTHO05D003089 7.9e-07 57.8 78 41.0
FAN18G3648 Fragaria x ananassa HOM05D002803 ORTHO05D003089 7.9e-07 57.8 78 41.0
FAN08G1483 Fragaria x ananassa HOM05D002803 ORTHO05D003089 1.0e-06 57.4 78 41.0
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.0e-06 57.4 98 37.8
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.0e-06 57.4 98 37.8
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 1.0e-06 57.4 77 40.3
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 1.3e-06 57.0 60 48.3
FAN13G3198 Fragaria x ananassa HOM05D002803 ORTHO05D003089 1.8e-06 56.6 78 41.0
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 2.3e-06 56.2 80 40.0
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 2.3e-06 56.2 65 43.1
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 2.3e-06 56.2 98 36.7
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 2.3e-06 56.2 70 40.0
HPP92_026410 Vanilla planifolia HOM05D002803 ORTHO05D003089 2.3e-06 56.2 40 55.0
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 3.9e-06 55.5 95 34.7
COL.COLO4_22704 Corchorus olitorius HOM05D002803 ORTHO05D003089 3.9e-06 55.5 68 41.2
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 5.1e-06 55.1 68 44.1
ECA246G0188 Erigeron canadensis HOM05D002803 ORTHO05D003089 5.1e-06 55.1 85 34.1
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 5.1e-06 55.1 76 35.5
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 6.7e-06 54.7 81 39.5
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 6.7e-06 54.7 36 58.3
SEGI_13625 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.7e-06 54.7 68 44.1
SEGI_32988 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.7e-06 54.7 68 44.1
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 6.7e-06 54.7 70 37.1
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 8.7e-06 54.3 79 38.0
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 8.7e-06 54.3 34 58.8
HPP92_023771 Vanilla planifolia HOM05D002803 ORTHO05D003089 8.7e-06 54.3 38 55.3


User provided reference genes

Program Settings