Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 9.7e-228 793.1 395 100.0
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 1.6e-174 616.3 391 74.4
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 2.4e-170 602.4 391 74.4
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 2.4e-170 602.4 391 73.4
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.4e-170 602.4 391 72.9
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 5.4e-170 601.3 392 74.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 7.8e-169 597.4 391 71.4
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.3e-168 596.7 393 72.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 2.3e-168 595.9 392 72.7
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 5.6e-167 591.3 391 73.1
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 7.3e-167 590.9 391 73.1
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 9.6e-167 590.5 392 72.2
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.1e-166 589.3 391 72.6
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.6e-166 588.6 390 72.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 3.6e-166 588.6 392 72.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.6e-166 588.6 391 71.6
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.1e-166 587.4 391 72.4
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.1e-165 587.0 419 69.0
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 6.9e-165 584.3 392 71.9
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.0e-164 582.8 403 70.5
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-164 582.4 391 71.6
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.3e-163 580.1 391 70.8
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 2.9e-163 578.9 391 70.8
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.8e-163 578.6 391 71.1
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 1.1e-162 577.0 391 69.3
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 2.4e-162 575.9 394 68.8
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.6e-161 573.2 381 73.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.1e-160 568.2 390 70.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 6.6e-160 567.8 394 69.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 8.7e-160 567.4 448 63.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 5.6e-159 564.7 391 69.3
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 7.3e-159 564.3 394 69.5
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 9.6e-159 563.9 418 67.2
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 3.6e-158 562.0 391 68.8
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.4e-157 560.1 417 66.9
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 5.3e-157 558.1 393 66.7
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 6.9e-157 557.8 396 67.9
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.5e-156 556.6 394 66.2
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.5e-156 556.6 391 67.3
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.0e-156 556.2 391 67.5
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.6e-156 555.8 396 66.4
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 4.5e-156 555.1 394 66.5
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 4.5e-156 555.1 394 66.8
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 7.6e-156 554.3 391 68.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 7.6e-156 554.3 391 67.0
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 9.9e-156 553.9 392 67.3
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.3e-155 553.5 391 66.5
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.7e-155 553.1 396 67.2
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.2e-155 552.7 396 67.2
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 2.9e-155 552.4 394 67.0
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 6.4e-155 551.2 391 66.2
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.4e-154 550.1 393 64.9
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.4e-154 549.3 406 64.5
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.2e-154 548.9 394 66.0
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 4.2e-154 548.5 396 66.7
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 5.4e-154 548.1 391 66.5
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.1e-153 546.2 390 67.2
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 2.1e-153 546.2 393 66.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 3.5e-153 545.4 391 67.0
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 7.9e-153 544.3 394 65.5
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.8e-152 543.1 396 66.2
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 3.0e-152 542.3 391 66.8
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 5.1e-152 541.6 393 64.6
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.1e-151 540.4 381 67.2
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.9e-151 539.7 467 58.9
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.5e-151 539.3 360 72.2
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 5.6e-151 538.1 391 66.0
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 4.8e-150 535.0 391 66.0
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.8e-149 533.1 385 64.7
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 2.6e-148 529.3 391 65.5
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.6e-148 529.3 426 61.3
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 6.4e-147 524.6 381 68.0
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.9e-146 523.1 394 64.0
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.9e-146 523.1 426 60.6
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 3.2e-146 522.3 356 70.5
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.2e-145 520.4 396 64.4
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.7e-145 519.2 391 63.4
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 7.9e-145 517.7 391 63.9
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 2.3e-136 489.6 359 66.6
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.7e-134 482.3 503 50.7
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.8e-133 479.9 386 63.2
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 9.0e-133 477.6 330 67.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.9e-130 469.9 442 55.9
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.9e-130 469.9 392 58.7
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.7e-129 466.1 432 57.2
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.2e-122 442.6 390 56.2
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.7e-121 439.5 350 60.9
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 5.1e-120 435.3 392 56.1
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.1e-117 427.6 313 64.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 7.2e-114 414.8 283 69.6
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 1.8e-109 400.2 272 70.6
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.5e-108 395.6 293 66.6
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 2.2e-107 393.3 274 67.5
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.2e-105 387.5 398 50.8
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.7e-99 367.1 251 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.0e-96 357.8 406 46.6
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.3e-96 356.7 402 47.0
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 6.3e-94 348.6 236 72.0
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 4.7e-89 332.4 314 52.5
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.3e-86 324.3 396 44.7
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.4e-85 320.1 220 69.5
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.0e-79 300.4 228 63.2
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 3.4e-79 299.7 482 37.3
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 7.3e-74 282.0 193 69.9
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 4.7e-73 279.3 372 40.6
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 5.8e-63 245.7 319 40.8
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.8e-54 216.5 142 69.7
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 6.6e-43 179.1 150 62.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 2.4e-40 170.6 528 27.7
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 1.0e-35 155.2 109 65.1
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-33 146.4 119 60.5
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-33 146.4 119 60.5
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-33 146.4 119 60.5
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.1e-33 145.6 119 59.7
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-32 144.8 119 59.7
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-32 144.1 119 59.7
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 5.3e-32 142.9 103 62.1
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-31 141.4 80 83.8
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.8e-31 139.4 90 71.1
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.6e-31 139.0 106 60.4
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-30 137.9 85 72.9
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.2e-28 131.7 79 77.2
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-28 131.3 171 44.4
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-26 125.2 75 77.3
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 9.6e-26 122.1 111 51.4
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 6.2e-25 119.4 109 53.2
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.1e-24 117.1 71 76.1
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-23 114.4 252 34.5
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-21 107.5 131 46.6
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.9e-20 102.4 62 72.6
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.9e-20 102.4 62 72.6
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.3e-19 100.9 62 71.0
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.1e-18 98.6 60 76.7
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 7.4e-18 95.9 67 62.7
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.2e-17 94.4 62 69.4
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-16 91.7 62 66.1
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-15 87.4 106 41.5
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 3.4e-15 87.0 71 56.3
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 8.5e-14 82.4 54 72.2
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-12 77.8 63 63.5
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 2.7e-12 77.4 115 38.3
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 6.3e-09 66.2 71 43.7
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 8.2e-09 65.9 32 90.6
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 1.4e-08 65.1 42 66.7
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 8.5e-06 55.8 34 76.5


User provided reference genes

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