Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.7e-157 557.8 282 100.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 9.2e-83 311.2 277 60.6
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.6e-82 310.5 279 61.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 4.3e-80 302.4 288 59.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.8e-79 299.7 318 53.8
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.3e-78 296.6 277 58.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.8e-78 295.0 287 57.5
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.9e-76 289.7 282 56.7
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.2e-75 286.2 283 57.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.2e-75 284.6 286 56.6
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.5e-74 282.7 318 51.3
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.5e-74 282.7 318 51.3
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 4.6e-74 282.3 290 54.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 4.6e-74 282.3 305 53.8
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 7.8e-74 281.6 289 57.8
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.0e-73 281.2 286 55.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 6.6e-73 278.5 291 55.0
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.6e-71 272.7 290 55.9
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 6.2e-71 271.9 279 57.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.4e-70 270.8 290 55.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.4e-70 270.8 304 53.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.4e-70 270.8 285 52.6
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 8.9e-70 268.1 287 54.4
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.2e-69 267.7 301 52.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 3.4e-69 266.2 286 52.1
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.4e-69 266.2 285 56.8
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.9e-69 264.6 282 53.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.9e-69 264.6 282 53.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.3e-68 264.2 287 51.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.9e-68 263.1 292 54.1
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 8.4e-68 261.5 286 53.8
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.2e-67 259.2 291 54.3
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.3e-67 258.1 282 52.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 9.3e-67 258.1 289 50.5
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.6e-66 257.3 281 55.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 2.1e-66 256.9 292 52.1
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.6e-66 255.8 302 49.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 6.0e-66 255.4 288 52.4
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 6.0e-66 255.4 297 48.8
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 7.8e-66 255.0 282 53.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.0e-65 254.6 285 50.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.7e-65 253.8 230 58.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 3.3e-64 249.6 283 53.0
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 9.6e-64 248.1 271 50.2
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.8e-63 245.7 283 53.4
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.1e-63 245.0 280 53.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 8.1e-63 245.0 328 47.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-62 244.2 280 53.2
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.8e-62 243.8 278 53.6
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.8e-62 243.8 280 53.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.8e-62 243.8 280 53.2
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.4e-62 243.4 292 52.1
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 5.3e-62 242.3 293 51.9
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.3e-62 242.3 270 53.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.3e-62 242.3 286 52.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 5.3e-62 242.3 282 51.8
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 9.0e-62 241.5 281 54.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-61 240.4 280 53.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.4e-61 239.6 293 49.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 4.5e-61 239.2 279 49.8
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.5e-61 239.2 272 52.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 4.5e-61 239.2 281 52.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 9.9e-61 238.0 279 50.5
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 9.9e-61 238.0 278 52.2
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.3e-60 237.7 292 52.7
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.9e-60 236.5 288 51.7
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.8e-60 236.1 282 51.4
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 6.4e-60 235.3 289 51.9
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-59 234.2 285 52.3
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-59 234.2 285 52.3
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.4e-59 233.4 288 51.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.2e-59 233.0 288 51.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.4e-59 232.3 290 50.0
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 9.3e-59 231.5 276 51.4
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.2e-58 231.1 288 51.0
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.2e-58 231.1 289 51.6
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.2e-58 231.1 284 49.6
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.5e-58 229.6 303 50.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.5e-58 229.6 282 50.0
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 6.0e-58 228.8 291 49.8
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 7.9e-58 228.4 301 47.5
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.0e-57 228.0 260 50.0
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.3e-57 227.6 281 49.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.8e-57 227.3 281 50.2
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.3e-57 226.9 298 49.7
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.0e-57 226.5 228 56.1
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.9e-57 226.1 274 50.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.9e-57 226.1 303 46.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 6.7e-57 225.3 294 51.4
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 6.7e-57 225.3 287 51.2
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 6.7e-57 225.3 287 48.4
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.5e-56 223.4 295 49.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.6e-56 222.2 285 47.7
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.3e-55 221.1 293 48.8
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.8e-55 219.9 247 54.3
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 3.6e-55 219.5 277 50.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.6e-55 219.5 281 47.7
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 4.8e-55 219.2 257 50.6
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 8.1e-55 218.4 276 49.6
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.8e-54 217.2 267 51.3
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.4e-54 216.9 296 46.6
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.1e-54 216.5 298 47.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 6.9e-54 215.3 271 49.1
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.9e-54 215.3 221 55.2
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-53 214.5 283 48.8
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-52 211.1 277 46.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.2e-52 210.3 295 47.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.8e-52 209.5 221 54.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 6.4e-52 208.8 295 47.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 6.4e-52 208.8 280 47.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.9e-51 207.2 294 47.6
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.2e-51 206.5 308 46.1
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.2e-51 206.1 288 50.0
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 7.1e-51 205.3 279 49.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 9.3e-51 204.9 294 46.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.7e-50 203.4 280 48.6
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 7.9e-50 201.8 298 43.6
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.0e-49 201.4 288 48.6
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.0e-49 201.4 283 47.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.3e-49 201.1 284 47.2
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.5e-48 196.8 277 48.4
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-48 196.4 284 47.2
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-48 196.4 293 45.4
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.3e-48 196.1 281 44.8
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.3e-48 196.1 278 45.0
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 5.6e-48 195.7 296 43.6
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.3e-47 194.5 287 49.5
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.7e-47 193.0 169 58.6
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.2e-47 192.2 160 62.5
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 3.1e-46 189.9 276 47.5
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.9e-44 182.6 231 49.8
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.1e-43 181.4 272 42.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.4e-43 181.0 167 58.1
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.2e-43 179.9 249 46.6
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.2e-43 179.5 195 54.4
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.0e-42 175.6 283 42.8
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.9e-41 172.9 154 57.8
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.1e-40 171.4 262 43.1
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 9.6e-40 168.3 128 62.5
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.4e-38 164.5 270 41.9
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.1e-35 154.8 151 53.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 5.5e-35 152.5 127 59.1
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.3e-33 147.9 228 43.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.9e-33 146.4 267 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 5.7e-32 142.5 131 55.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 9.7e-32 141.7 131 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.2e-31 140.6 118 59.3
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 6.9e-30 135.6 120 59.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.5e-29 134.4 176 47.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.0e-29 134.0 143 49.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.4e-22 111.3 147 42.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.0e-21 107.5 80 66.2
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 8.8e-17 92.0 154 42.9
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.3e-16 90.1 134 44.0
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-14 84.3 165 40.6
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.9e-11 74.3 127 42.5
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 9.4e-11 72.0 53 64.2
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.6e-10 71.2 114 47.4
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.3e-09 67.4 111 46.8
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 5.7e-08 62.8 104 40.4
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 6.3e-07 59.3 153 34.6
Cre03.g154200 Chlamydomonas reinhardtii HOM05D004323 ORTHO05D005140 7.0e-06 55.8 115 36.5


User provided reference genes

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