Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 2.9e-78 295.0 138 100.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.2e-46 189.1 108 77.8
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.5e-45 186.4 100 80.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.9e-45 186.0 100 81.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.5e-45 185.7 125 71.2
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.2e-44 183.3 94 85.1
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.6e-44 183.0 95 84.2
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.1e-44 182.6 99 80.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.7e-44 182.2 94 81.9
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.7e-44 182.2 94 81.9
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.7e-44 182.2 91 83.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 3.6e-44 181.8 100 81.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 8.0e-44 180.6 98 80.6
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.0e-43 180.3 96 80.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.4e-43 179.9 100 81.0
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.8e-43 179.5 98 78.6
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.8e-43 179.5 96 81.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.8e-43 179.5 91 83.5
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.3e-43 179.1 91 86.8
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 2.3e-43 179.1 91 86.8
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 4.0e-43 178.3 126 64.3
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 6.8e-43 177.6 103 78.6
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 6.8e-43 177.6 98 77.6
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-42 176.8 123 69.9
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-42 176.8 123 69.9
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.2e-42 176.8 96 78.1
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.2e-42 176.8 94 83.0
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.2e-42 176.8 91 84.6
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.2e-42 176.8 95 80.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.5e-42 176.4 98 80.6
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.6e-42 175.6 106 73.6
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.6e-42 175.6 120 69.2
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.4e-42 175.3 91 84.6
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 4.4e-42 174.9 128 69.5
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 4.4e-42 174.9 137 63.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.7e-42 174.5 91 82.4
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 5.7e-42 174.5 126 67.5
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.7e-42 174.5 111 71.2
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 5.7e-42 174.5 107 73.8
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 7.5e-42 174.1 94 79.8
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 9.8e-42 173.7 95 81.1
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 9.8e-42 173.7 128 68.8
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.3e-41 173.3 95 80.0
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.3e-41 173.3 116 71.6
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.2e-41 172.6 94 78.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 2.2e-41 172.6 89 84.3
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.2e-41 172.6 95 80.0
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 2.8e-41 172.2 107 72.9
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 2.8e-41 172.2 91 78.0
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 4.8e-41 171.4 118 69.5
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 6.3e-41 171.0 81 90.1
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 6.3e-41 171.0 81 90.1
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 6.3e-41 171.0 81 91.4
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.1e-40 170.2 117 69.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.1e-40 170.2 80 88.8
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.1e-40 170.2 136 64.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 1.4e-40 169.9 132 63.6
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.4e-40 169.9 97 77.3
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.8e-40 169.5 97 78.4
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 4.1e-40 168.3 122 64.8
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.1e-40 168.3 104 70.2
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 7.0e-40 167.5 81 90.1
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.0e-40 167.5 81 87.7
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 7.0e-40 167.5 95 78.9
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.2e-39 166.8 127 65.4
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 2.0e-39 166.0 97 74.2
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.0e-38 163.7 91 75.8
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.3e-38 163.3 79 87.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.7e-38 162.9 96 76.0
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.7e-38 162.9 125 63.2
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 5.0e-38 161.4 95 75.8
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 5.0e-38 161.4 111 68.5
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.5e-37 159.8 118 64.4
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 3.2e-37 158.7 150 55.3
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 4.2e-37 158.3 72 93.1
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 9.4e-37 157.1 122 60.7
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 2.7e-36 155.6 92 73.9
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 4.0e-35 151.8 116 57.8
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 5.2e-35 151.4 94 73.4
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 8.8e-35 150.6 90 70.0
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 7.0e-32 141.0 103 60.2
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 7.0e-32 141.0 173 43.4
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 9.1e-32 140.6 174 43.1
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.7e-31 139.0 81 71.6
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.9e-30 135.6 98 60.2
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 8.6e-30 134.0 171 43.3
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 7.0e-24 114.4 51 92.2
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 2.7e-23 112.5 55 81.8
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 2.3e-22 109.4 51 90.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 2.9e-22 109.0 51 90.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.5e-21 106.7 52 86.5
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 2.8e-20 102.4 88 58.0
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 6.6e-14 81.3 86 44.2
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 3.6e-12 75.5 47 72.3
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 1.1e-11 73.9 34 79.4
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.8e-11 73.2 81 43.2
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.8e-11 73.2 83 43.4
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 6.8e-11 71.2 43 72.1
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 6.8e-11 71.2 79 44.3
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 8.9e-11 70.9 86 39.5
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 8.9e-11 70.9 50 68.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 1.2e-10 70.5 82 41.5
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.2e-10 70.5 77 44.2
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.2e-10 70.5 80 42.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.0e-10 69.7 86 39.5
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.6e-10 69.3 83 41.0
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 3.4e-10 68.9 79 43.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.4e-10 68.6 84 39.3
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 4.4e-10 68.6 77 42.9
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.8e-10 68.2 83 43.4
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 5.8e-10 68.2 80 41.2
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 5.8e-10 68.2 83 39.8
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 5.8e-10 68.2 79 40.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 5.8e-10 68.2 80 42.5
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.5e-10 67.8 83 41.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.5e-10 67.8 83 41.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 7.5e-10 67.8 83 38.6
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 7.5e-10 67.8 79 41.8
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 7.5e-10 67.8 79 40.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 9.8e-10 67.4 84 39.3
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 9.8e-10 67.4 79 41.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 9.8e-10 67.4 79 41.8
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 9.8e-10 67.4 91 40.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 9.8e-10 67.4 84 39.3
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.3e-09 67.0 80 40.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.7e-09 66.6 79 39.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.7e-09 66.6 91 40.7
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.7e-09 66.6 87 41.4
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.2e-09 66.2 79 39.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.2e-09 66.2 79 38.0
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.2e-09 66.2 84 38.1
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.9e-09 65.9 79 41.8
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.9e-09 65.9 79 40.5
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.7e-09 65.5 77 41.6
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 3.7e-09 65.5 79 39.2
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 4.9e-09 65.1 86 40.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.9e-09 65.1 86 38.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 4.9e-09 65.1 79 40.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 4.9e-09 65.1 87 36.8
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 6.4e-09 64.7 79 39.2
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 6.4e-09 64.7 79 41.8
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 8.3e-09 64.3 79 38.0
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 8.3e-09 64.3 87 37.9
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.1e-08 63.9 85 37.6
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 39.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.4e-08 63.5 83 38.6
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.4e-08 63.5 83 37.3
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.4e-08 63.5 83 37.3
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.4e-08 63.5 87 36.8
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.9e-08 63.2 84 38.1
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.9e-08 63.2 77 41.6
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.9e-08 63.2 87 37.9
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.2e-08 62.4 92 35.9
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.1e-08 62.0 83 38.6
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 4.1e-08 62.0 83 36.1
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 4.1e-08 62.0 83 36.1
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 5.4e-08 61.6 79 36.7
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 5.4e-08 61.6 77 39.0
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 9.2e-08 60.8 84 36.9
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 9.2e-08 60.8 86 38.4
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.2e-07 60.5 90 36.7
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.2e-07 60.5 79 36.7
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.6e-07 60.1 83 37.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.1e-07 59.7 79 36.7
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 2.1e-07 59.7 83 37.3
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 2.1e-07 59.7 82 36.6
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.1e-07 59.7 83 36.1
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.7e-07 59.3 87 36.8
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 4.6e-07 58.5 87 36.8
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 7.8e-07 57.8 80 37.5
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.0e-06 57.4 90 34.4
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.7e-06 56.6 90 34.4
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.3e-06 56.2 83 36.1


User provided reference genes

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