Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02798 Eucalyptus grandis HOM05D007158 ORTHO05D007424 3.5e-114 415.2 250 100.0
Cfa007880 Carpinus fangiana HOM05D007158 ORTHO05D007424 2.1e-50 203.4 250 50.4
TAR629G2388 Trochodendron aralioides HOM05D007158 ORTHO05D007424 9.1e-46 188.0 250 52.0
PGR004G0702 Punica granatum HOM05D007158 ORTHO05D007424 1.2e-45 187.6 252 45.2
GSVIVG01030945001 Vitis vinifera HOM05D007158 ORTHO05D007424 7.7e-45 184.9 250 54.8
Ciclev10012598m.g Citrus clementina HOM05D007158 ORTHO05D007424 4.2e-43 179.1 250 44.0
QL02p049322 Quercus lobata HOM05D007158 ORTHO05D007424 2.3e-41 173.3 249 49.8
ClCG07G016450 Citrullus lanatus HOM05D007158 ORTHO05D007424 1.5e-40 170.6 263 46.4
MELO3C010379.2 Cucumis melo HOM05D007158 ORTHO05D007424 5.9e-37 158.7 262 42.4
CiPaw.04G044500 Carya illinoinensis HOM05D007158 ORTHO05D007424 1.0e-36 157.9 250 42.4
Thecc.04G126100 Theobroma cacao HOM05D007158 ORTHO05D007424 8.5e-36 154.8 213 50.7
TWI74G0884 Tripterygium wilfordii HOM05D007158 ORTHO05D007424 8.5e-36 154.8 251 48.6
TAR374G0148 Trochodendron aralioides HOM05D007158 ORTHO05D007424 8.5e-36 154.8 209 50.7
Gohir.D11G167600 Gossypium hirsutum HOM05D007158 ORTHO05D007424 1.4e-35 154.1 248 47.2
Gorai.007G178700 Gossypium raimondii HOM05D007158 ORTHO05D007424 1.4e-35 154.1 248 47.2
CsaV3_4G010370 Cucumis sativus L. HOM05D007158 ORTHO05D007424 1.9e-35 153.7 223 45.7
Duzib138G0519 Durio zibethinus HOM05D007158 ORTHO05D007424 9.4e-35 151.4 250 44.8
Rhsim08G0084200 Rhododendron simsii HOM05D007158 ORTHO05D007424 1.2e-34 151.0 251 49.4
Gohir.A11G161300 Gossypium hirsutum HOM05D007158 ORTHO05D007424 2.1e-34 150.2 248 46.4
Manes.01G113800 Manihot esculenta HOM05D007158 ORTHO05D007424 2.7e-34 149.8 250 47.6
Prupe.3G150100 Prunus persica HOM05D007158 ORTHO05D007424 2.7e-34 149.8 250 43.6
Actinidia17647 Actinidia chinensis HOM05D007158 ORTHO05D007424 3.6e-34 149.4 202 55.4
Haze_14197 Corylus avellana HOM05D007158 ORTHO05D007424 1.0e-33 147.9 168 48.2
MD09G1258200 Malus domestica HOM05D007158 ORTHO05D007424 1.0e-33 147.9 214 47.7
Lalb_Chr10g0091481 Lupinus albus HOM05D007158 ORTHO05D007424 1.4e-33 147.5 195 43.6
Glyma.02G090200 Glycine max HOM05D007158 ORTHO05D007424 5.2e-33 145.6 193 51.3
Dinv14854 Davidia involucrata HOM05D007158 ORTHO05D007424 1.1e-32 144.4 189 51.3
Hma1.2p1_0500F.1_g167110 Hydrangea macrophylla HOM05D007158 ORTHO05D007424 1.5e-32 144.1 252 44.4
COL.COLO4_03615 Corchorus olitorius HOM05D007158 ORTHO05D007424 2.6e-32 143.3 206 49.5
Dinv33973 Davidia involucrata HOM05D007158 ORTHO05D007424 2.6e-32 143.3 274 45.6
Phvul.008G009100 Phaseolus vulgaris HOM05D007158 ORTHO05D007424 2.6e-32 143.3 253 47.0
HanXRQChr09g0262471 Helianthus annuus HOM05D007158 ORTHO05D007424 5.7e-32 142.1 162 54.9
Nn4g24036 Nelumbo nucifera HOM05D007158 ORTHO05D007424 5.7e-32 142.1 190 52.1
Atru.chr1.1578 Acer truncatum HOM05D007158 ORTHO05D007424 2.8e-31 139.8 207 50.2
Duzib133G0688 Durio zibethinus HOM05D007158 ORTHO05D007424 3.7e-31 139.4 216 48.6
ECA232G0903 Erigeron canadensis HOM05D007158 ORTHO05D007424 3.7e-31 139.4 210 50.0
CANSAT78G1746 Cannabis sativa HOM05D007158 ORTHO05D007424 6.3e-31 138.7 208 44.2
Potri.017G121000 Populus trichocarpa HOM05D007158 ORTHO05D007424 8.2e-31 138.3 259 45.9
CDE04G0479 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 2.4e-30 136.7 259 40.2
Cpa.g.sc170.15 Carica papaya HOM05D007158 ORTHO05D007424 5.3e-30 135.6 260 41.9
arahy.Tifrunner.gnm1.ann1.5M3IQK Arachis hypogaea HOM05D007158 ORTHO05D007424 7.0e-30 135.2 209 45.0
Ah.10g037870 Amaranthus hybridus HOM05D007158 ORTHO05D007424 1.2e-29 134.4 192 51.0
RcHm_v2.0_Chr1g0332591 Rosa chinensis HOM05D007158 ORTHO05D007424 1.2e-29 134.4 250 37.6
CAN.G225.14 Capsicum annuum HOM05D007158 ORTHO05D007424 1.6e-29 134.0 251 41.8
Lj4A182G65 Lonicera japonica HOM05D007158 ORTHO05D007424 2.6e-29 133.3 151 51.7
Medtr7g082850 Medicago truncatula HOM05D007158 ORTHO05D007424 2.6e-29 133.3 195 50.8
CDE06G2846 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 4.5e-29 132.5 209 48.3
arahy.Tifrunner.gnm1.ann1.896A9W Arachis hypogaea HOM05D007158 ORTHO05D007424 7.7e-29 131.7 209 43.5
DCAR_025891 Daucus carota HOM05D007158 ORTHO05D007424 1.3e-28 131.0 207 45.9
Aqoxy3G00164 Aquilegia oxysepala HOM05D007158 ORTHO05D007424 1.7e-28 130.6 216 50.0
Psat3g097040 Pisum sativum HOM05D007158 ORTHO05D007424 2.2e-28 130.2 259 40.2
Lsat_1_v5_gn_4_156301 Lactuca sativa HOM05D007158 ORTHO05D007424 2.9e-28 129.8 254 49.6
Nitab4.5_0002644g0050 Nicotiana tabacum HOM05D007158 ORTHO05D007424 2.9e-28 129.8 255 42.7
Cc07_g08430 Coffea canephora HOM05D007158 ORTHO05D007424 8.5e-28 128.3 249 44.2
Migut.H00250 Erythranthe guttata HOM05D007158 ORTHO05D007424 8.5e-28 128.3 200 43.0
Hund13698 Selenicereus undatus HOM05D007158 ORTHO05D007424 1.1e-27 127.9 230 46.5
Peaxi162Scf00343g00058 Petunia axillaris HOM05D007158 ORTHO05D007424 1.9e-27 127.1 196 48.5
VMungo1383G1080 Vigna mungo HOM05D007158 ORTHO05D007424 1.9e-27 127.1 198 47.5
Nitab4.5_0000036g0590 Nicotiana tabacum HOM05D007158 ORTHO05D007424 4.2e-27 125.9 262 41.6
HPP92_023114 Vanilla planifolia HOM05D007158 ORTHO05D007424 4.2e-27 125.9 252 44.8
Glyma.18G293000 Glycine max HOM05D007158 ORTHO05D007424 7.2e-27 125.2 193 48.7
Oeu047435.1 Olea europaea HOM05D007158 ORTHO05D007424 9.4e-27 124.8 270 40.7
AUR62023262 Chenopodium quinoa HOM05D007158 ORTHO05D007424 1.2e-26 124.4 188 45.7
Potri.004G094500 Populus trichocarpa HOM05D007158 ORTHO05D007424 1.6e-26 124.0 262 42.7
FvH4_7g05720 Fragaria vesca HOM05D007158 ORTHO05D007424 2.7e-26 123.2 231 40.7
FAN01G1160 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.7e-26 123.2 231 40.7
Solyc02g063280.4 Solanum lycopersicum HOM05D007158 ORTHO05D007424 3.6e-26 122.9 255 42.4
Sc10g0001000 Simmondsia chinensis HOM05D007158 ORTHO05D007424 4.7e-26 122.5 213 44.6
PGSC0003DMG400010413 Solanum tuberosum HOM05D007158 ORTHO05D007424 4.7e-26 122.5 256 41.4
Sopen02g014350 Solanum pennellii HOM05D007158 ORTHO05D007424 1.0e-25 121.3 253 43.1
ATR0743G078 Amborella trichopoda HOM05D007158 ORTHO05D007424 1.4e-25 120.9 207 45.9
TPR.G28397 Trifolium pratense HOM05D007158 ORTHO05D007424 1.4e-25 120.9 202 44.1
Lj1g0013464 Lotus japonicus HOM05D007158 ORTHO05D007424 1.8e-25 120.6 135 53.3
Sabra17G0103400 Salix brachista HOM05D007158 ORTHO05D007424 4.0e-25 119.4 216 44.0
MSTRG.2781 Avicennia marina HOM05D007158 ORTHO05D007424 5.2e-25 119.0 215 45.6
PSO339G0418 Papaver somniferum HOM05D007158 ORTHO05D007424 6.7e-25 118.6 148 50.7
Os01g0505700 Oryza sativa ssp. japonica HOM05D007158 ORTHO05D007424 8.8e-25 118.2 189 46.0
Ca_08098_v3 Cicer arietinum L. HOM05D007158 ORTHO05D007424 4.4e-24 115.9 195 40.0
FAN10G2330 Fragaria x ananassa HOM05D007158 ORTHO05D007424 9.7e-24 114.8 211 41.7
Rhsim10G0076900 Rhododendron simsii HOM05D007158 ORTHO05D007424 1.3e-23 114.4 242 39.7
Zm00001eb300940 Zea mays HOM05D007158 ORTHO05D007424 1.3e-23 114.4 217 46.5
PSO384G2845 Papaver somniferum HOM05D007158 ORTHO05D007424 2.4e-22 110.2 87 67.8
FAN23G0239 Fragaria x ananassa HOM05D007158 ORTHO05D007424 5.3e-22 109.0 230 38.3
EL10Ac2g04517 Beta vulgaris HOM05D007158 ORTHO05D007424 3.8e-20 102.8 197 44.2
vmacro18064 Vaccinium macrocarpon HOM05D007158 ORTHO05D007424 1.5e-19 100.9 201 45.3
FAN03G1259 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.5e-19 100.1 147 39.5
SHI25695 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-19 99.0 103 50.5
Sabra04G0063800 Salix brachista HOM05D007158 ORTHO05D007424 7.2e-19 98.6 192 42.2
SGA_v2.0_scaffold202G41480 Striga asiatica HOM05D007158 ORTHO05D007424 1.2e-18 97.8 195 39.5
Sed0005493 Sechium edule HOM05D007158 ORTHO05D007424 2.1e-18 97.1 170 40.6
FAN04G1654 Fragaria x ananassa HOM05D007158 ORTHO05D007424 4.7e-18 95.9 147 38.8
THA.LOC104809979 Tarenaya hassleriana HOM05D007158 ORTHO05D007424 4.0e-17 92.8 250 28.8
Sabra17G0100100 Salix brachista HOM05D007158 ORTHO05D007424 6.8e-17 92.0 215 37.7
Oeu061824.1 Olea europaea HOM05D007158 ORTHO05D007424 4.8e-15 85.9 169 38.5
Rhsim10G0074300 Rhododendron simsii HOM05D007158 ORTHO05D007424 4.5e-13 79.3 196 37.8
SMO119G0024 Selaginella moellendorffii HOM05D007158 ORTHO05D007424 1.3e-12 77.8 78 53.8
Mapoly0099s0058 Marchantia polymorpha HOM05D007158 ORTHO05D007424 9.5e-11 71.6 157 35.0
AT1G60640 Arabidopsis thaliana HOM05D007158 ORTHO05D007424 2.1e-10 70.5 212 36.3
Pp3c14_9040 Physcomitrium patens HOM05D007158 ORTHO05D007424 6.1e-10 68.9 123 39.0
CBR_g32195 Chara braunii HOM05D007158 ORTHO05D007424 1.4e-09 67.8 68 51.5
Sp2g04080 Schrenkiella parvula HOM05D011338 ORTHO05D007424 4.0e-09 66.2 79 45.6
AL2G15950 Arabidopsis lyrata HOM05D011338 ORTHO05D007424 1.5e-08 64.3 212 33.5
BraA01t03075Z Brassica rapa HOM05D011338 ORTHO05D007424 3.4e-08 63.2 74 44.6
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 3.4e-08 63.2 47 70.2
AagrBONN_evm.TU.Sc2ySwM_117.711 Anthoceros agrestis HOM05D007158 ORTHO05D007424 7.5e-08 62.0 169 33.1
A01p29410 Brassica napus HOM05D011338 ORTHO05D007424 9.8e-08 61.6 74 44.6
Thhalv10023615m.g Eutrema salsugineum HOM05D011338 ORTHO05D007424 1.7e-07 60.8 59 47.5
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 1.7e-07 60.8 58 62.1
Carub.0002s0469 Capsella rubella HOM05D007158 ORTHO05D007424 2.2e-07 60.5 43 60.5
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 4.9e-07 59.3 45 68.9
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 6.3e-07 58.9 56 55.4
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 6.3e-07 58.9 56 55.4
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 8.3e-07 58.5 45 66.7
CARHR052290 Cardamine hirsuta HOM05D007158 ORTHO05D007424 1.1e-06 58.2 200 33.0
MD00G1054400 Malus domestica HOM05D007158 ORTHO05D007424 7.0e-06 55.5 85 40.0
C04p25850 Brassica napus HOM05D011338 ORTHO05D007424 9.2e-06 55.1 42 57.1
BolC4t24223H Brassica oleracea HOM05D011338 ORTHO05D007424 9.2e-06 55.1 42 57.1
CARHR052300 Cardamine hirsuta HOM05D011338 ORTHO05D007424 9.2e-06 55.1 40 60.0


User provided reference genes

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