Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02792 Eucalyptus grandis HOM05D000678 ORTHO05D001709 1.3e-154 549.7 279 100.0
Ciclev10011483m.g Citrus clementina HOM05D000678 ORTHO05D001709 4.4e-41 172.6 283 42.0
GSVIVG01030974001 Vitis vinifera HOM05D000678 ORTHO05D001709 4.9e-40 169.1 283 40.6
Sabra04G0064800 Salix brachista HOM05D000678 ORTHO05D001709 2.3e-37 160.2 272 42.6
TWI53G1549 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 5.0e-37 159.1 301 39.9
QL04p012112 Quercus lobata HOM05D000678 ORTHO05D001709 4.3e-36 156.0 281 39.1
QL02p050274 Quercus lobata HOM05D000678 ORTHO05D001709 3.0e-34 149.8 281 38.4
Potri.004G095600 Populus trichocarpa HOM05D000678 ORTHO05D001709 5.7e-33 145.6 265 41.5
Potri.017G119100 Populus trichocarpa HOM05D000678 ORTHO05D001709 1.3e-32 144.4 269 39.4
Sabra17G0098400 Salix brachista HOM05D000678 ORTHO05D001709 2.2e-32 143.7 268 40.3
Manes.02G071700 Manihot esculenta HOM05D000678 ORTHO05D001709 1.1e-31 141.4 275 38.9
Dinv34792 Davidia involucrata HOM05D000678 ORTHO05D001709 2.7e-30 136.7 285 38.9
Thecc.04G128600 Theobroma cacao HOM05D000678 ORTHO05D001709 4.6e-30 136.0 280 39.3
Prupe.3G148700 Prunus persica HOM05D000678 ORTHO05D001709 8.0e-27 125.2 273 37.7
COL.COLO4_09377 Corchorus olitorius HOM05D000678 ORTHO05D001709 3.1e-26 123.2 277 38.3
Gohir.A11G166300 Gossypium hirsutum HOM05D000678 ORTHO05D001709 4.0e-26 122.9 280 36.8
Gohir.D11G172300 Gossypium hirsutum HOM05D000678 ORTHO05D001709 5.8e-25 119.0 282 35.8
Gorai.007G184900 Gossypium raimondii HOM05D000678 ORTHO05D001709 1.7e-24 117.5 282 35.5
Cpa.g.sc170.29 Carica papaya HOM05D000678 ORTHO05D001709 2.2e-24 117.1 282 36.2
Atru.chr1.1613 Acer truncatum HOM05D000678 ORTHO05D001709 2.9e-24 116.7 258 36.0
Duzib268G0701 Durio zibethinus HOM05D000678 ORTHO05D001709 2.4e-23 113.6 294 36.1
Haze_14186 Corylus avellana HOM05D000678 ORTHO05D001709 9.2e-23 111.7 245 34.7
PGR042G2786 Punica granatum HOM05D000678 ORTHO05D001709 1.6e-22 110.9 271 37.3
TAR629G1340 Trochodendron aralioides HOM05D000678 ORTHO05D001709 1.6e-22 110.9 291 34.7
CiPaw.03G064900 Carya illinoinensis HOM05D000678 ORTHO05D001709 3.5e-22 109.8 242 32.6
Actinidia15901 Actinidia chinensis HOM05D000678 ORTHO05D001709 1.1e-20 104.8 288 31.6
Thecc.02G221000 Theobroma cacao HOM05D000678 ORTHO05D001709 4.3e-20 102.8 210 38.6
Cpa.g.sc65.72 Carica papaya HOM05D000678 ORTHO05D001709 1.6e-19 100.9 301 33.2
Rhsim10G0072800 Rhododendron simsii HOM05D000678 ORTHO05D001709 1.6e-19 100.9 285 34.4
Manes.06G064500 Manihot esculenta HOM05D000678 ORTHO05D001709 6.2e-19 99.0 231 33.3
vmacro22955 Vaccinium macrocarpon HOM05D000678 ORTHO05D001709 2.3e-18 97.1 285 33.3
Cfa015832 Carpinus fangiana HOM05D000678 ORTHO05D001709 1.2e-17 94.7 307 32.2
Sabra10G0089900 Salix brachista HOM05D000678 ORTHO05D001709 1.5e-17 94.4 301 31.9
Duzib251G0315 Durio zibethinus HOM05D000678 ORTHO05D001709 3.4e-17 93.2 279 33.0
CiPaw.05G243000 Carya illinoinensis HOM05D000678 ORTHO05D001709 4.4e-17 92.8 294 32.0
Nn4g23966 Nelumbo nucifera HOM05D000678 ORTHO05D001709 5.8e-17 92.4 296 32.4
Nn3g17962 Nelumbo nucifera HOM05D000678 ORTHO05D001709 7.5e-17 92.0 237 32.1
Cfa007890 Carpinus fangiana HOM05D000678 ORTHO05D001709 1.3e-16 91.3 245 32.2
MSTRG.864 Avicennia marina HOM05D000678 ORTHO05D001709 1.7e-16 90.9 228 32.5
Nitab4.5_0002112g0180 Nicotiana tabacum HOM05D000678 ORTHO05D001709 1.7e-16 90.9 270 30.4
Cc07_g08520 Coffea canephora HOM05D000678 ORTHO05D001709 2.9e-16 90.1 277 30.0
Manes.14G107500 Manihot esculenta HOM05D000678 ORTHO05D001709 3.7e-16 89.7 288 30.6
Duzib133G0205 Durio zibethinus HOM05D000678 ORTHO05D001709 4.9e-16 89.4 277 30.7
Lj2g0020361 Lotus japonicus HOM05D000678 ORTHO05D001709 6.4e-16 89.0 264 31.1
Lalb_Chr21g0308711 Lupinus albus HOM05D000678 ORTHO05D001709 8.3e-16 88.6 210 36.7
TAR622G0820 Trochodendron aralioides HOM05D000678 ORTHO05D001709 1.1e-15 88.2 325 29.5
Sc11g0003800 Simmondsia chinensis HOM05D000678 ORTHO05D001709 2.4e-15 87.0 250 31.2
TWI79G1500 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 2.4e-15 87.0 223 35.4
MSTRG.2214 Avicennia marina HOM05D000678 ORTHO05D001709 3.2e-15 86.7 290 32.1
CSS0026543 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D001709 3.2e-15 86.7 233 33.0
Cc11_g09610 Coffea canephora HOM05D000678 ORTHO05D001709 3.2e-15 86.7 268 32.8
SalBow3G1765 Salvia bowleyana HOM05D000678 ORTHO05D001709 7.1e-15 85.5 262 32.8
Dinv31588 Davidia involucrata HOM05D000678 ORTHO05D001709 1.2e-14 84.7 197 33.5
Ciclev10014450m.g Citrus clementina HOM05D000678 ORTHO05D001709 1.6e-14 84.3 233 34.8
arahy.Tifrunner.gnm1.ann1.K9IHFT Arachis hypogaea HOM05D000678 ORTHO05D001709 2.1e-14 84.0 206 34.0
Lj4A183T29 Lonicera japonica HOM05D000678 ORTHO05D001709 2.1e-14 84.0 265 30.6
MSTRG.7639 Avicennia marina HOM05D000678 ORTHO05D001709 2.7e-14 83.6 231 32.5
Oeu048370.1 Olea europaea HOM05D000678 ORTHO05D001709 2.7e-14 83.6 259 34.0
ECA232G2721 Erigeron canadensis HOM05D000678 ORTHO05D001709 3.5e-14 83.2 240 32.9
Sed0014043 Sechium edule HOM05D000678 ORTHO05D001709 4.6e-14 82.8 254 33.1
arahy.Tifrunner.gnm1.ann1.6UH2MB Arachis hypogaea HOM05D000678 ORTHO05D001709 1.3e-13 81.3 285 31.9
TWI31G0040 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 2.3e-13 80.5 219 32.9
Cc04_g06810 Coffea canephora HOM05D000678 ORTHO05D001709 3.0e-13 80.1 220 30.9
Haze_00659 Corylus avellana HOM05D000678 ORTHO05D001709 3.0e-13 80.1 182 37.4
CiPaw.15G136200 Carya illinoinensis HOM05D000678 ORTHO05D001709 3.9e-13 79.7 242 31.0
ClCG11G007670 Citrullus lanatus HOM05D000678 ORTHO05D001709 3.9e-13 79.7 245 33.9
Sc04g0005960 Simmondsia chinensis HOM05D000678 ORTHO05D001709 3.9e-13 79.7 219 32.4
PGSC0003DMG400005666 Solanum tuberosum HOM05D000678 ORTHO05D001709 3.9e-13 79.7 224 31.7
TWI75G0363 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 3.9e-13 79.7 295 29.8
Psat6g224080 Pisum sativum HOM05D000678 ORTHO05D001709 5.1e-13 79.3 211 34.1
Potri.010G119500 Populus trichocarpa HOM05D000678 ORTHO05D001709 5.1e-13 79.3 324 29.3
TAR374G0028 Trochodendron aralioides HOM05D000678 ORTHO05D001709 5.1e-13 79.3 254 31.5
Atru.chr11.244 Acer truncatum HOM05D000678 ORTHO05D001709 6.6e-13 79.0 255 32.5
unitig_0.g2340 Utricularia gibba HOM05D000678 ORTHO05D001709 6.6e-13 79.0 276 30.1
arahy.Tifrunner.gnm1.ann1.MH5ZQA Arachis hypogaea HOM05D000678 ORTHO05D001709 8.6e-13 78.6 282 30.1
CAN.G1129.45 Capsicum annuum HOM05D000678 ORTHO05D001709 8.6e-13 78.6 227 30.8
CAN.G625.57 Capsicum annuum HOM05D000678 ORTHO05D001709 8.6e-13 78.6 277 29.6
Gohir.D05G324700 Gossypium hirsutum HOM05D000678 ORTHO05D001709 1.1e-12 78.2 197 34.5
Solyc02g086360.3 Solanum lycopersicum HOM05D000678 ORTHO05D001709 1.1e-12 78.2 284 28.5
COL.COLO4_32124 Corchorus olitorius HOM05D000678 ORTHO05D001709 1.9e-12 77.4 288 31.2
MELO3C012278.2 Cucumis melo HOM05D000678 ORTHO05D001709 1.9e-12 77.4 249 32.1
SalBow8G2881 Salvia bowleyana HOM05D000678 ORTHO05D001709 1.9e-12 77.4 289 29.4
Sopen03g037820 Solanum pennellii HOM05D000678 ORTHO05D001709 2.5e-12 77.0 226 29.6
Sopen02g031020 Solanum pennellii HOM05D000678 ORTHO05D001709 3.3e-12 76.6 281 28.1
CsaV3_5G034630 Cucumis sativus L. HOM05D000678 ORTHO05D001709 4.3e-12 76.3 247 31.6
MD16G1036800 Malus domestica HOM05D000678 ORTHO05D001709 4.3e-12 76.3 311 29.6
Aqoxy3G00193 Aquilegia oxysepala HOM05D000678 ORTHO05D001709 7.3e-12 75.5 212 30.2
PGSC0003DMG400026379 Solanum tuberosum HOM05D000678 ORTHO05D001709 7.3e-12 75.5 284 28.5
AUR62023265 Chenopodium quinoa HOM05D000678 ORTHO05D001709 9.5e-12 75.1 280 29.3
Nitab4.5_0000753g0200 Nicotiana tabacum HOM05D000678 ORTHO05D001709 9.5e-12 75.1 278 29.1
Prupe.1G317300 Prunus persica HOM05D000678 ORTHO05D001709 9.5e-12 75.1 310 30.3
Sopen05g004590 Solanum pennellii HOM05D000678 ORTHO05D001709 9.5e-12 75.1 267 27.3
Nitab4.5_0011439g0020 Nicotiana tabacum HOM05D000678 ORTHO05D001709 1.6e-11 74.3 278 28.1
Solyc05g008830.3 Solanum lycopersicum HOM05D000678 ORTHO05D001709 1.6e-11 74.3 267 27.3
Lj5g0002524 Lotus japonicus HOM05D000678 ORTHO05D001709 2.8e-11 73.6 203 35.5
Nitab4.5_0001456g0060 Nicotiana tabacum HOM05D000678 ORTHO05D001709 2.8e-11 73.6 289 26.3
RcHm_v2.0_Chr4g0434361 Rosa chinensis HOM05D000678 ORTHO05D001709 2.8e-11 73.6 327 29.1
Dinv16142 Davidia involucrata HOM05D000678 ORTHO05D001709 4.7e-11 72.8 209 31.1
GSVIVG01008346001 Vitis vinifera HOM05D000678 ORTHO05D001709 4.7e-11 72.8 218 32.6
CANSAT80G2533 Cannabis sativa HOM05D000678 ORTHO05D001709 6.2e-11 72.4 214 32.2
Eucgr.G02235 Eucalyptus grandis HOM05D000678 ORTHO05D001709 6.2e-11 72.4 195 35.4
Oeu050385.1 Olea europaea HOM05D000678 ORTHO05D001709 6.2e-11 72.4 280 27.5
arahy.Tifrunner.gnm1.ann1.GYF1N1 Arachis hypogaea HOM05D000678 ORTHO05D001709 8.1e-11 72.0 181 33.1
arahy.Tifrunner.gnm1.ann1.XF22CN Arachis hypogaea HOM05D000678 ORTHO05D001709 8.1e-11 72.0 205 32.2
Dinv17517 Davidia involucrata HOM05D000678 ORTHO05D001709 8.1e-11 72.0 286 27.6
Peaxi162Scf00877g00021 Petunia axillaris HOM05D000678 ORTHO05D001709 8.1e-11 72.0 285 29.5
Duzib205G2049 Durio zibethinus HOM05D000678 ORTHO05D001709 1.1e-10 71.6 294 29.9
TPR.G4821 Trifolium pratense HOM05D000678 ORTHO05D001709 2.4e-10 70.5 203 33.0
Ca_06894_v3 Cicer arietinum L. HOM05D000678 ORTHO05D001709 3.1e-10 70.1 174 35.1
FAN12G2310 Fragaria x ananassa HOM05D000678 ORTHO05D001709 3.1e-10 70.1 308 28.9
FAN12G3926 Fragaria x ananassa HOM05D000678 ORTHO05D001709 3.1e-10 70.1 309 28.8
HanXRQChr09g0262671 Helianthus annuus HOM05D000678 ORTHO05D001709 5.2e-10 69.3 226 32.7
CSS0005059 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D001709 8.9e-10 68.6 215 29.3
AUR62009041 Chenopodium quinoa HOM05D000678 ORTHO05D001709 8.9e-10 68.6 206 33.0
Carub.0006s1441 Capsella rubella HOM05D000678 ORTHO05D001709 1.2e-09 68.2 293 30.4
CAN.G610.21 Capsicum annuum HOM05D000678 ORTHO05D001709 1.2e-09 68.2 269 27.9
MD13G1034900 Malus domestica HOM05D000678 ORTHO05D001709 1.2e-09 68.2 221 29.4
Migut.H00240 Erythranthe guttata HOM05D000678 ORTHO05D001709 1.5e-09 67.8 270 31.5
Gorai.009G348900 Gossypium raimondii HOM05D000678 ORTHO05D001709 1.5e-09 67.8 174 33.3
Medtr1g109470 Medicago truncatula HOM05D000678 ORTHO05D001709 1.5e-09 67.8 205 33.7
unitig_52.g17378 Utricularia gibba HOM05D000678 ORTHO05D001709 1.5e-09 67.8 228 32.9
ClCG05G022440 Citrullus lanatus HOM05D000678 ORTHO05D001709 2.6e-09 67.0 250 30.8
SGA_v2.0_scaffold38G15009 Striga asiatica HOM05D000678 ORTHO05D001709 2.6e-09 67.0 232 28.4
Gohir.A05G314300 Gossypium hirsutum HOM05D000678 ORTHO05D001709 3.4e-09 66.6 174 32.8
Thecc.03G043200 Theobroma cacao HOM05D000678 ORTHO05D001709 3.4e-09 66.6 304 29.6
Manes.05G120200 Manihot esculenta HOM05D000678 ORTHO05D001709 4.4e-09 66.2 235 30.6
Actinidia38364 Actinidia chinensis HOM05D000678 ORTHO05D001709 5.8e-09 65.9 195 29.2
QL01p010688 Quercus lobata HOM05D000678 ORTHO05D001709 7.6e-09 65.5 207 29.5
QL01p010763 Quercus lobata HOM05D000678 ORTHO05D001709 7.6e-09 65.5 207 29.5
VMungo0720G1183 Vigna mungo HOM05D000678 ORTHO05D001709 7.6e-09 65.5 279 28.0
Oeu007192.1 Olea europaea HOM05D000678 ORTHO05D001709 9.9e-09 65.1 236 30.1
THA.LOC104820938 Tarenaya hassleriana HOM05D000678 ORTHO05D001709 1.3e-08 64.7 204 30.4
CANSAT80G2524 Cannabis sativa HOM05D000678 ORTHO05D001709 1.7e-08 64.3 310 29.7
Hma1.2p1_0767F.1_g215510 Hydrangea macrophylla HOM05D000678 ORTHO05D001709 1.7e-08 64.3 194 29.9
Phvul.007G032500 Phaseolus vulgaris HOM05D000678 ORTHO05D001709 2.2e-08 63.9 209 30.6
Hund25030 Selenicereus undatus HOM05D000678 ORTHO05D001709 2.2e-08 63.9 226 29.2
FAN17G2574 Fragaria x ananassa HOM05D000678 ORTHO05D001709 2.9e-08 63.5 331 27.5
Peaxi162Scf00179g00536 Petunia axillaris HOM05D000678 ORTHO05D001709 4.9e-08 62.8 290 27.2
Glyma.20G121100 Glycine max HOM05D000678 ORTHO05D001709 1.4e-07 61.2 211 29.4
Sabra08G0094200 Salix brachista HOM05D000678 ORTHO05D001709 1.4e-07 61.2 330 24.5
MELO3C008162.2 Cucumis melo HOM05D000678 ORTHO05D001709 2.4e-07 60.5 261 31.0
Peaxi162Scf00564g00614 Petunia axillaris HOM05D000678 ORTHO05D001709 3.2e-07 60.1 288 26.4
Prupe.5G225400 Prunus persica HOM05D000678 ORTHO05D001709 3.2e-07 60.1 205 29.3
Sp6g27940 Schrenkiella parvula HOM05D000678 ORTHO05D001709 3.2e-07 60.1 248 30.6
Hund16185 Selenicereus undatus HOM05D000678 ORTHO05D001709 3.2e-07 60.1 266 27.1
SGA_v2.0_scaffold202G41470 Striga asiatica HOM05D000678 ORTHO05D001709 3.2e-07 60.1 219 30.1
Peaxi162Scf01127g00002 Petunia axillaris HOM05D000678 ORTHO05D001709 5.4e-07 59.3 237 28.7
Duzib068G1423 Durio zibethinus HOM05D000678 ORTHO05D001709 9.2e-07 58.5 286 29.4
Glyma.09G116000 Glycine max HOM05D000678 ORTHO05D001709 9.2e-07 58.5 289 29.8
AUR62023220 Chenopodium quinoa HOM05D000678 ORTHO05D001709 1.2e-06 58.2 263 30.4
MELO3C017326.2 Cucumis melo HOM05D000678 ORTHO05D001709 1.6e-06 57.8 315 29.5
SalBow8G3645 Salvia bowleyana HOM05D000678 ORTHO05D001709 1.6e-06 57.8 266 30.5
Haze_18745 Corylus avellana HOM05D000678 ORTHO05D001709 2.1e-06 57.4 213 30.5
AT5G16220 Arabidopsis thaliana HOM05D000678 ORTHO05D001709 3.5e-06 56.6 255 29.8
CsaV3_1G004030 Cucumis sativus L. HOM05D000678 ORTHO05D001709 3.5e-06 56.6 312 28.8
Ah.16g101530 Amaranthus hybridus HOM05D000678 ORTHO05D001709 4.6e-06 56.2 254 30.7
VMungo0464G0840 Vigna mungo HOM05D000678 ORTHO05D001709 4.6e-06 56.2 176 31.8
BcaB08g36856 Brassica carinata HOM05D000678 ORTHO05D001709 6.0e-06 55.8 257 30.4
Glyma.10G270200 Glycine max HOM05D000678 ORTHO05D001709 6.0e-06 55.8 198 29.3


User provided reference genes

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