Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 7.5e-167 590.5 308 100.0
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.7e-49 200.7 304 44.4
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.4e-48 196.8 203 53.7
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 7.7e-47 191.8 157 60.5
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.3e-46 191.0 187 55.6
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.2e-46 190.3 185 56.2
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 3.6e-44 183.0 326 39.3
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 4.7e-44 182.6 361 40.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.8e-43 180.6 300 43.0
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 2.3e-43 180.3 171 54.4
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.0e-43 179.5 280 43.6
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 5.2e-43 179.1 144 61.8
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 5.2e-43 179.1 176 54.0
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 6.8e-43 178.7 261 46.4
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.5e-42 177.6 265 44.9
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.5e-42 177.6 259 45.2
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.6e-42 176.8 310 41.0
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.6e-42 176.8 143 62.2
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 5.7e-42 175.6 143 60.1
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 9.8e-42 174.9 165 55.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.3e-41 174.5 268 43.7
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.7e-41 174.1 147 59.2
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 1.7e-41 174.1 303 40.6
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.7e-41 174.1 290 41.7
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.2e-41 173.7 181 51.9
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 2.8e-41 173.3 194 52.1
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 3.7e-41 172.9 307 40.4
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 4.8e-41 172.6 276 38.0
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.1e-40 171.4 239 46.9
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.4e-40 171.0 259 42.5
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.4e-40 171.0 174 52.3
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.8e-40 170.6 163 51.5
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 4.1e-40 169.5 237 41.8
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 4.1e-40 169.5 154 54.5
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 4.1e-40 169.5 277 40.4
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 7.0e-40 168.7 252 42.5
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.2e-39 167.9 139 58.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.2e-39 167.9 283 39.9
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.2e-39 167.9 281 40.9
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-39 167.9 200 48.5
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.2e-39 167.9 262 38.5
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 2.0e-39 167.2 174 48.9
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.7e-39 166.8 267 42.7
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 2.7e-39 166.8 177 50.3
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 3.5e-39 166.4 278 40.6
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 3.5e-39 166.4 142 56.3
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 3.5e-39 166.4 252 43.3
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.5e-39 166.0 146 54.8
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 4.5e-39 166.0 146 54.8
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 4.5e-39 166.0 301 42.2
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 5.9e-39 165.6 146 54.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 5.9e-39 165.6 280 39.3
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 7.7e-39 165.2 146 54.8
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 7.7e-39 165.2 147 52.4
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 7.7e-39 165.2 162 54.9
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.7e-38 164.1 332 38.6
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.9e-38 163.3 252 40.1
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 2.9e-38 163.3 171 54.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 3.8e-38 162.9 248 40.7
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 3.8e-38 162.9 311 38.6
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 5.0e-38 162.5 244 41.4
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 6.6e-38 162.2 290 41.0
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 6.6e-38 162.2 150 56.0
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 8.6e-38 161.8 249 45.4
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 8.6e-38 161.8 249 42.6
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.9e-37 160.6 278 38.8
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.5e-37 160.2 142 55.6
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.3e-37 159.8 250 42.4
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.5e-37 159.1 352 34.1
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 7.2e-37 158.7 145 53.8
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 7.2e-37 158.7 188 45.2
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.2e-37 158.7 319 38.2
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.5e-37 158.3 250 42.0
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.2e-36 157.9 154 51.9
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.2e-36 157.9 281 38.4
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.1e-36 157.1 352 34.4
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.1e-36 155.6 282 39.7
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.0e-35 154.8 352 35.2
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.8e-35 154.1 278 39.9
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.3e-35 153.7 279 37.3
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.0e-35 152.9 324 37.3
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 1.5e-34 151.0 247 38.5
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.0e-34 150.6 279 38.4
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 2.6e-34 150.2 263 35.0
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 3.4e-34 149.8 140 52.1
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 7.5e-34 148.7 133 54.9
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 9.8e-34 148.3 169 52.1
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.3e-33 147.9 135 53.3
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.7e-33 146.4 217 41.5
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 6.3e-33 145.6 134 53.0
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 8.3e-33 145.2 141 51.8
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.4e-32 144.4 289 37.4
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.8e-32 144.1 174 48.9
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 2.4e-32 143.7 278 39.6
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.6e-31 141.0 365 32.6
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 2.0e-31 140.6 285 35.1
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.7e-31 140.2 145 52.4
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.5e-31 139.8 148 50.7
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.0e-30 138.3 231 42.0
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.3e-30 137.9 306 35.3
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 3.9e-30 136.3 291 36.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 4.7e-28 129.4 142 47.9
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.8e-27 127.5 158 49.4
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 8.9e-27 125.2 149 47.0
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 8.9e-27 125.2 197 38.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 3.4e-26 123.2 264 34.8
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.9e-25 120.2 278 32.7
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.4e-25 119.0 238 37.8
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 3.2e-24 116.7 341 27.6
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 7.8e-23 112.1 203 36.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.0e-22 111.7 280 30.7
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.3e-22 111.3 398 27.6
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.0e-22 110.2 278 30.6
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.6e-22 109.0 208 36.1
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.1e-21 108.2 107 54.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.5e-21 107.8 163 39.9
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 5.6e-21 105.9 145 42.8
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.3e-21 105.5 278 30.2
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 2.8e-20 103.6 301 29.6
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.1e-19 101.7 271 32.5
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 8.9e-19 98.6 246 34.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 3.4e-18 96.7 96 53.1
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.2e-16 90.1 234 33.3
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 5.4e-16 89.4 90 55.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.0e-14 83.6 169 36.7
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.9e-14 83.2 100 42.0
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 5.1e-14 82.8 98 46.9
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.3e-13 79.7 320 27.2
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 6.2e-12 75.9 67 50.7
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 8.9e-11 72.0 278 24.8
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 2.2e-09 67.4 104 29.8
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.9e-08 64.3 195 29.7
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 2.1e-07 60.8 216 27.3
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.0e-06 58.5 50 58.0
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 1.7e-06 57.8 77 42.9


User provided reference genes

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