Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 2305.0 1168 100.0
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1885.5 1167 82.5
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1884.8 1171 81.8
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1882.8 1167 82.4
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1882.1 1171 82.4
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1875.9 1171 82.2
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1872.8 1169 81.5
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1862.8 1172 81.7
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1852.8 1172 82.2
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1850.5 1171 81.0
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1847.8 1169 80.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1844.7 1169 81.1
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1842.4 1171 80.6
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1842.0 1168 80.5
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1842.0 1168 80.6
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1840.5 1168 80.4
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1840.5 1226 77.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1833.5 1169 80.8
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1829.7 1167 80.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1828.1 1176 79.5
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1826.2 1178 79.9
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1818.1 1171 79.3
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1817.7 1171 79.8
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1815.0 1163 79.4
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1811.2 1170 80.1
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1808.1 1193 78.3
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1807.7 1178 79.7
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1804.3 1194 78.1
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1229 76.6
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1167 78.6
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1800.0 1169 79.0
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1800.0 1172 79.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1796.9 1207 77.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1793.1 1207 77.7
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1792.7 1212 77.6
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1792.7 1216 77.4
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1169 79.0
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1790.4 1171 79.1
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1790.0 1172 77.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1788.5 1216 77.1
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1170 77.8
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1782.3 1216 77.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1170 78.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1779.2 1167 78.1
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1778.8 1167 78.2
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1171 77.5
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1770.4 1167 77.8
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1765.0 1168 78.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1762.7 1168 77.8
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1761.9 1208 76.1
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1761.5 1170 77.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1758.8 1169 77.0
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1758.4 1173 78.1
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1756.1 1169 76.8
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1753.8 1178 76.7
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1752.6 1204 75.8
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1168 76.9
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1743.4 1200 75.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1742.2 1163 76.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1175 76.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1170 76.2
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1166 76.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1733.0 1166 76.1
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1168 76.5
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1158 76.7
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1163 75.7
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1728.4 1172 76.0
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1721.4 1171 75.9
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1720.7 1171 76.6
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1718.4 1205 74.4
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1230 73.5
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1716.8 1172 75.7
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1716.4 1173 75.9
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1713.7 1230 72.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1713.4 1174 76.2
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1712.2 1171 75.3
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1711.8 1173 75.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1170 75.5
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1709.9 1175 76.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1708.7 1170 75.6
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1708.0 1165 75.6
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1705.6 1170 76.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1705.3 1174 76.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1226 71.9
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1703.0 1168 76.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1201 74.3
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1172 75.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1175 74.6
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1697.9 1172 76.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1696.8 1173 74.4
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1694.9 1172 74.7
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1189 74.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1684.8 1175 74.0
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1682.2 1175 74.0
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1681.0 1100 78.4
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1678.3 1174 73.8
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1677.9 1175 74.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1677.1 1168 75.2
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1672.9 1168 75.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1172 75.1
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1173 74.8
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1664.4 1150 74.8
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1661.0 1175 72.7
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1660.2 1169 73.7
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1654.8 1175 74.1
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1652.1 1174 74.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1645.6 1182 72.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1643.6 1082 78.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1632.1 1162 73.4
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1619.8 1189 71.9
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1149 73.1
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1610.5 1173 71.6
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1604.0 1203 70.4
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1600.5 1169 71.1
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1587.4 1169 71.1
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1580.8 1168 69.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1575.8 1174 69.6
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1548.1 1112 73.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1510.4 946 80.8
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1489.9 1169 68.4
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1475.3 945 79.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1436.8 1177 65.8
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1401.0 1035 73.0
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1361.7 941 74.8
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1344.3 969 73.3
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1280.0 959 72.1
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1261.1 1172 59.9
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1258.4 974 70.7
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1256.5 889 74.0
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1226.5 963 69.2
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1193.3 805 77.9
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1172.5 815 75.8
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1127.5 812 72.8
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1117.1 806 73.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.5e-308 1062.4 1162 54.5
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 8.7e-301 1037.3 722 75.2
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.5e-289 1000.0 1167 48.4
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.8e-285 986.5 1191 47.4
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.2e-281 973.8 537 89.8
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 5.2e-261 905.2 604 78.1
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.1e-258 897.5 714 68.1
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 7.4e-191 672.2 426 78.4
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 8.0e-169 599.0 358 82.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 6.1e-145 519.6 305 81.3
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.5e-138 498.4 894 39.5
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 8.9e-136 489.2 303 79.5
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.2e-135 488.8 303 79.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 5.1e-123 446.8 606 46.0
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.6e-121 440.7 283 79.2
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.4e-117 428.7 811 35.3
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.3e-107 395.6 1334 28.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 4.8e-97 360.5 221 77.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.7e-86 325.5 510 42.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 7.1e-85 320.1 196 79.6
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.6e-81 308.9 279 63.4
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 4.8e-81 307.4 182 80.8
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 6.9e-80 303.5 207 74.9
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.6e-68 265.8 182 71.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.4e-67 262.7 257 61.9
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 3.3e-66 258.1 145 88.3
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 6.3e-65 253.8 173 75.1
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.8e-64 252.3 185 70.3
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 5.5e-53 214.2 173 65.9
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 3.0e-51 208.4 130 82.3
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.4e-48 199.5 118 87.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.5e-45 188.7 125 75.2
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-37 162.5 92 91.3
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 5.0e-30 137.9 87 80.5
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 6.6e-30 137.5 92 75.0
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 6.6e-30 137.5 92 75.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 5.0e-22 111.3 78 70.5
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.4e-18 98.6 82 63.4
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.9e-17 95.5 79 62.0
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 3.7e-17 95.1 55 81.8
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.4e-17 94.4 81 58.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.4e-16 93.2 46 82.6
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.2e-12 80.1 98 51.0


User provided reference genes

Program Settings