Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 6.0e-155 550.8 283 100.0
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.3e-92 342.4 236 72.0
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 4.2e-92 342.0 239 70.7
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 5.2e-90 335.1 239 70.3
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.8e-90 334.7 237 69.6
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.2e-89 334.0 235 71.5
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 4.4e-89 332.0 233 70.8
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.7e-88 328.9 234 68.8
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.9e-88 328.6 239 69.0
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 8.3e-88 327.8 239 67.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.0e-86 323.2 235 69.4
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.5e-86 322.4 235 69.4
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.7e-85 320.1 239 67.4
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.7e-85 320.1 235 68.5
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 2.3e-85 319.7 235 67.7
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 2.9e-85 319.3 237 66.2
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 5.0e-85 318.5 219 74.0
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.9e-84 316.6 239 69.9
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.5e-84 316.2 239 66.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 5.6e-84 315.1 235 68.5
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 9.5e-84 314.3 239 68.6
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 4.7e-83 312.0 234 66.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.4e-82 310.5 234 68.8
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 8.9e-82 307.8 239 67.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.4e-81 305.8 239 64.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.2e-80 303.1 239 63.2
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 8.3e-80 301.2 244 61.1
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.4e-79 300.4 239 62.3
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 5.4e-79 298.5 239 62.3
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 5.4e-79 298.5 241 58.5
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.4e-79 298.5 239 63.2
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 5.4e-79 298.5 239 63.2
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.2e-78 297.4 237 60.8
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 4.6e-78 295.4 235 61.3
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.3e-77 293.9 233 63.9
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.9e-76 290.0 238 60.9
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 3.3e-76 289.3 235 60.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 4.3e-76 288.9 203 66.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 5.6e-76 288.5 238 60.9
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 9.5e-76 287.7 248 58.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.2e-75 287.3 234 62.0
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-75 287.0 241 58.9
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.6e-75 285.8 239 61.5
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 4.7e-75 285.4 239 61.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.4e-74 283.9 241 60.2
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.8e-74 283.5 239 60.7
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.8e-74 283.5 206 67.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 8.9e-74 281.2 269 55.0
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.2e-73 280.8 236 59.3
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.8e-73 278.5 265 54.3
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.3e-72 277.3 230 61.3
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 7.0e-71 271.6 196 66.3
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 7.0e-71 271.6 196 68.9
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 2.3e-69 266.5 203 64.5
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.5e-68 263.8 206 63.1
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.6e-67 260.4 236 54.2
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 2.8e-67 259.6 197 64.5
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 3.6e-67 259.2 253 54.2
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.1e-66 257.7 217 58.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.5e-65 253.8 237 54.4
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.6e-65 253.1 241 53.1
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.6e-65 253.1 239 53.6
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 3.4e-65 252.7 241 53.5
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 7.5e-65 251.5 236 55.1
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.3e-64 250.8 236 53.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.7e-64 250.4 198 64.1
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.2e-64 250.0 241 52.7
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.2e-64 250.0 251 57.4
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.9e-64 249.6 241 52.7
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.9e-64 249.6 241 52.7
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.7e-64 249.2 241 53.1
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.7e-64 249.2 241 52.7
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 4.9e-64 248.8 241 52.7
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 4.9e-64 248.8 241 52.7
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 4.9e-64 248.8 241 53.1
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 4.9e-64 248.8 198 62.1
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.4e-63 247.3 239 53.6
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.4e-63 245.4 215 54.0
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 7.1e-63 245.0 241 53.1
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 7.1e-63 245.0 236 51.7
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 2.7e-62 243.0 240 51.2
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.9e-61 239.2 234 50.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.9e-60 236.9 234 53.4
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 9.5e-60 234.6 239 53.1
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 9.5e-60 234.6 185 63.2
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 6.2e-59 231.9 292 43.8
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.1e-58 231.1 240 51.7
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.4e-58 229.9 241 51.0
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 5.2e-58 228.8 199 61.3
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.6e-54 217.2 234 51.3
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 5.1e-53 212.2 230 52.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 4.3e-52 209.1 198 53.0
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 4.3e-52 209.1 233 46.8
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.3e-52 209.1 195 56.4
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 4.3e-52 209.1 184 59.8
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 5.6e-52 208.8 234 49.1
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 7.3e-52 208.4 237 49.8
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.7e-51 205.7 230 46.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.1e-50 203.0 267 47.9
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.2e-49 201.1 247 44.9
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 4.4e-49 199.1 240 44.2
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 7.6e-49 198.4 167 59.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 8.4e-48 194.9 241 45.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 4.0e-42 176.0 239 38.5
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.1e-39 165.2 232 41.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 2.1e-38 163.7 244 38.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-37 161.0 249 38.2
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 8.1e-35 151.8 157 49.7
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.9e-34 148.7 150 48.7
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-33 147.5 234 38.5
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.4e-33 146.4 201 41.8
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 4.5e-33 146.0 239 39.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.3e-32 144.4 106 60.4
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.3e-32 144.4 112 63.4
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 4.9e-32 142.5 106 62.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 6.4e-32 142.1 235 35.7
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.2e-30 137.9 102 64.7
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 6.0e-30 135.6 179 45.8
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.4e-26 124.4 106 57.5
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 4.5e-25 119.4 207 34.8
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.5e-25 119.4 104 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 7.9e-22 108.6 106 51.9
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 7.4e-20 102.1 126 45.2
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 9.7e-20 101.7 105 49.5
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 9.7e-20 101.7 122 46.7
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.4e-18 97.8 106 45.3
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 3.1e-18 96.7 106 43.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.1e-18 96.3 168 40.5
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 5.3e-18 95.9 155 39.4
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 5.0e-16 89.4 75 57.3
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.3e-13 80.5 71 52.1
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-10 69.7 219 25.1
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-09 67.8 113 36.3
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 2.0e-09 67.4 75 48.0
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.9e-08 63.5 42 71.4
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 9.4e-07 58.5 111 34.2
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 9.4e-07 58.5 185 27.0
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 6.1e-06 55.8 91 35.2
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 6.1e-06 55.8 81 42.0
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 6.1e-06 55.8 81 42.0
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 6.1e-06 55.8 81 42.0


User provided reference genes

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