Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.6e-48 195.7 92 100.0
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.0e-31 137.9 69 94.2
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.2e-31 137.5 69 89.9
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.2e-26 122.1 63 92.1
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 4.2e-25 117.9 68 75.0
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 4.2e-25 117.9 68 77.9
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 4.2e-25 117.9 68 77.9
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 5.5e-25 117.5 68 77.9
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 7.2e-25 117.1 77 68.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.6e-24 115.9 81 61.7
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.7e-24 115.2 68 75.0
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.7e-24 115.2 77 67.5
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 3.6e-24 114.8 68 73.5
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 3.6e-24 114.8 68 77.9
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.7e-24 114.4 77 66.2
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 4.7e-24 114.4 68 72.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 6.1e-24 114.0 68 73.5
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 6.1e-24 114.0 68 73.5
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 6.1e-24 114.0 68 73.5
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 8.0e-24 113.6 68 75.0
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 8.0e-24 113.6 68 76.5
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 8.0e-24 113.6 68 76.5
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 8.0e-24 113.6 69 72.5
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.0e-23 113.2 68 73.5
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.4e-23 112.8 68 73.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.4e-23 112.8 68 75.0
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.8e-23 112.5 80 62.5
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.8e-23 112.5 68 73.5
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.8e-23 112.5 77 64.9
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 2.3e-23 112.1 69 73.9
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.3e-23 112.1 69 73.9
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.3e-23 112.1 69 73.9
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.3e-23 112.1 69 73.9
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.0e-23 111.7 68 70.6
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 3.0e-23 111.7 68 72.1
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 4.0e-23 111.3 68 73.5
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 4.0e-23 111.3 68 75.0
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.2e-23 110.9 68 70.6
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 6.8e-23 110.5 77 64.9
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.8e-23 110.5 69 72.5
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 8.8e-23 110.2 68 67.6
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 8.8e-23 110.2 77 63.6
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 8.8e-23 110.2 77 63.6
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 8.8e-23 110.2 77 63.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 8.8e-23 110.2 68 72.1
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 8.8e-23 110.2 68 73.5
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 8.8e-23 110.2 68 73.5
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.2e-22 109.8 69 68.1
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.2e-22 109.8 69 71.0
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.2e-22 109.8 69 69.6
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.2e-22 109.8 69 69.6
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.0e-22 109.0 68 67.6
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 2.0e-22 109.0 68 69.1
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 2.0e-22 109.0 77 62.3
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 2.0e-22 109.0 77 62.3
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 2.0e-22 109.0 77 62.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 2.0e-22 109.0 68 75.0
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.0e-22 109.0 67 70.1
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.0e-22 109.0 67 73.1
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 2.0e-22 109.0 68 73.5
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.6e-22 108.6 67 70.1
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.6e-22 108.6 68 73.5
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.6e-22 108.6 68 70.6
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.6e-22 108.6 69 68.1
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.6e-22 108.6 69 68.1
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 3.4e-22 108.2 68 67.6
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 3.4e-22 108.2 68 70.6
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.4e-22 108.2 69 69.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 3.4e-22 108.2 68 67.6
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 3.4e-22 108.2 68 69.1
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 3.4e-22 108.2 68 70.6
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 4.4e-22 107.8 83 61.4
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.4e-22 107.8 69 68.1
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 5.7e-22 107.5 67 70.1
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 5.7e-22 107.5 68 73.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 5.7e-22 107.5 69 66.7
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 5.7e-22 107.5 69 68.1
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 5.7e-22 107.5 68 67.6
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 7.5e-22 107.1 68 67.6
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 9.8e-22 106.7 68 67.6
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 9.8e-22 106.7 68 67.6
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.3e-21 106.3 68 69.1
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.3e-21 106.3 68 66.2
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.7e-21 105.9 68 69.1
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.2e-21 105.5 68 70.6
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.8e-21 105.1 65 72.3
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 2.8e-21 105.1 65 72.3
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 2.8e-21 105.1 69 66.7
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.8e-21 105.1 69 66.7
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 4.8e-21 104.4 69 65.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 6.3e-21 104.0 68 69.1
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.3e-21 104.0 68 72.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 6.3e-21 104.0 68 64.7
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 6.3e-21 104.0 68 70.6
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 8.3e-21 103.6 68 64.7
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.4e-20 102.8 68 69.1
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 2.4e-20 102.1 68 69.1
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.4e-20 102.1 61 75.4
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.4e-20 102.1 68 70.6
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.4e-20 102.1 68 67.6
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.2e-19 99.8 68 67.6
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.2e-19 99.8 68 61.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.6e-19 99.4 68 63.2
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.6e-19 99.4 69 62.3
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 2.0e-19 99.0 68 64.7
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 3.5e-19 98.2 69 58.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.5e-19 98.2 68 69.1
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.0e-18 96.7 68 61.8
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.3e-18 96.3 68 61.8
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 6.5e-18 94.0 83 55.4
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.9e-17 92.4 84 53.6
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 5.5e-17 90.9 92 48.9
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 2.8e-16 88.6 80 50.0
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.4e-15 86.3 68 55.9
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 3.4e-14 81.6 68 57.4
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 4.9e-13 77.8 67 52.2
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.3e-10 69.7 43 72.1
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.2e-08 63.2 43 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 6.1e-08 60.8 65 44.6
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.8e-07 59.3 62 38.7
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 6.8e-07 57.4 40 60.0
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 4.4e-06 54.7 33 69.7
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 7.5e-06 53.9 33 66.7


User provided reference genes

Program Settings