Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02598 Eucalyptus grandis HOM05D005788 ORTHO05D007111 1.7e-156 555.8 260 100.0
Eucgr.F02589 Eucalyptus grandis HOM05D005788 ORTHO05D007111 5.8e-128 461.1 249 88.8
Potri.019G082200 Populus trichocarpa HOM05D005788 ORTHO05D007111 3.5e-117 425.2 246 80.5
GSVIVG01034778001 Vitis vinifera HOM05D005788 ORTHO05D007111 6.0e-117 424.5 248 80.2
PGR042G3638 Punica granatum HOM05D005788 ORTHO05D007111 3.9e-116 421.8 246 79.3
Thecc.08G185000 Theobroma cacao HOM05D005788 ORTHO05D007111 3.9e-116 421.8 244 80.7
Sabra19G0093700 Salix brachista HOM05D005788 ORTHO05D007111 5.1e-116 421.4 246 78.9
Ciclev10001278m.g Citrus clementina HOM05D005788 ORTHO05D007111 1.9e-115 419.5 246 79.3
Potri.013G111200 Populus trichocarpa HOM05D005788 ORTHO05D007111 4.3e-115 418.3 246 79.3
QL02p033376 Quercus lobata HOM05D005788 ORTHO05D007111 1.2e-114 416.8 246 78.9
Gohir.D13G125100 Gossypium hirsutum HOM05D005788 ORTHO05D007111 1.6e-114 416.4 245 79.6
CiPaw.08G058400 Carya illinoinensis HOM05D005788 ORTHO05D007111 4.7e-114 414.8 248 79.0
CANSAT25G2274 Cannabis sativa HOM05D005788 ORTHO05D007111 8.1e-114 414.1 248 77.0
Gohir.A13G121000 Gossypium hirsutum HOM05D005788 ORTHO05D007111 1.4e-113 413.3 245 79.2
Duzib177G0992 Durio zibethinus HOM05D005788 ORTHO05D007111 2.3e-113 412.5 247 78.5
Gorai.013G139900 Gossypium raimondii HOM05D005788 ORTHO05D007111 3.1e-113 412.1 245 78.8
TWI32G0118 Tripterygium wilfordii HOM05D005788 ORTHO05D007111 4.0e-113 411.8 246 78.5
Manes.02G192900 Manihot esculenta HOM05D005788 ORTHO05D007111 5.2e-113 411.4 246 77.2
Haze_22512 Corylus avellana HOM05D005788 ORTHO05D007111 6.8e-113 411.0 246 77.6
CSS0022814 Camellia sinensis var. sinensis HOM05D005788 ORTHO05D007111 8.9e-113 410.6 248 77.8
Glyma.10G217800 Glycine max HOM05D005788 ORTHO05D007111 8.9e-113 410.6 244 77.9
Glyma.20G174300 Glycine max HOM05D005788 ORTHO05D007111 8.9e-113 410.6 244 78.3
Sed0027152 Sechium edule HOM05D005788 ORTHO05D007111 8.9e-113 410.6 244 77.5
Dinv15067 Davidia involucrata HOM05D005788 ORTHO05D007111 1.2e-112 410.2 248 77.8
Cpa.g.sc66.28 Carica papaya HOM05D005788 ORTHO05D007111 2.0e-112 409.5 246 77.6
COL.COLO4_23644 Corchorus olitorius HOM05D005788 ORTHO05D007111 2.0e-112 409.5 245 78.4
VMungo0720G1820 Vigna mungo HOM05D005788 ORTHO05D007111 2.0e-112 409.5 245 77.6
Phvul.007G088300 Phaseolus vulgaris HOM05D005788 ORTHO05D007111 4.4e-112 408.3 245 77.6
ECA232G4191 Erigeron canadensis HOM05D005788 ORTHO05D007111 5.8e-112 407.9 244 78.3
Lj4A470G19 Lonicera japonica HOM05D005788 ORTHO05D007111 9.9e-112 407.1 248 76.2
MD08G1220600 Malus domestica HOM05D005788 ORTHO05D007111 1.7e-111 406.4 245 78.0
EL10Ac1g00095 Beta vulgaris HOM05D005788 ORTHO05D007111 3.8e-111 405.2 248 74.6
Cfa013840 Carpinus fangiana HOM05D005788 ORTHO05D007111 3.8e-111 405.2 246 76.8
Lj5g0012683 Lotus japonicus HOM05D005788 ORTHO05D007111 6.4e-111 404.4 246 76.0
Sc01g0001840 Simmondsia chinensis HOM05D005788 ORTHO05D007111 8.4e-111 404.1 247 74.9
CAN.G308.72 Capsicum annuum HOM05D005788 ORTHO05D007111 1.1e-110 403.7 246 76.8
ClCG08G008690 Citrullus lanatus HOM05D005788 ORTHO05D007111 1.1e-110 403.7 244 76.2
SalBow6G0056 Salvia bowleyana HOM05D005788 ORTHO05D007111 1.1e-110 403.7 248 76.2
HanXRQChr11g0325971 Helianthus annuus HOM05D005788 ORTHO05D007111 1.9e-110 402.9 246 76.4
Lalb_Chr02g0141721 Lupinus albus HOM05D005788 ORTHO05D007111 1.9e-110 402.9 246 75.2
vmacro21836 Vaccinium macrocarpon HOM05D005788 ORTHO05D007111 1.9e-110 402.9 243 75.7
Actinidia23338 Actinidia chinensis HOM05D005788 ORTHO05D007111 2.4e-110 402.5 248 74.2
Solyc06g065240.3 Solanum lycopersicum HOM05D005788 ORTHO05D007111 2.4e-110 402.5 246 76.4
Sopen06g023730 Solanum pennellii HOM05D005788 ORTHO05D007111 2.4e-110 402.5 246 76.4
Rhsim06G0094900 Rhododendron simsii HOM05D005788 ORTHO05D007111 4.1e-110 401.7 248 75.0
Migut.N03360 Erythranthe guttata HOM05D005788 ORTHO05D007111 5.4e-110 401.4 250 73.6
Prupe.1G557500 Prunus persica HOM05D005788 ORTHO05D007111 5.4e-110 401.4 245 76.3
TAR381G0209 Trochodendron aralioides HOM05D005788 ORTHO05D007111 7.1e-110 401.0 248 75.8
Nitab4.5_0000303g0240 Nicotiana tabacum HOM05D005788 ORTHO05D007111 9.2e-110 400.6 246 77.2
arahy.Tifrunner.gnm1.ann1.U09KPS Arachis hypogaea HOM05D005788 ORTHO05D007111 1.2e-109 400.2 255 73.7
PGSC0003DMG400026071 Solanum tuberosum HOM05D005788 ORTHO05D007111 1.6e-109 399.8 246 76.0
arahy.Tifrunner.gnm1.ann1.UXJV1A Arachis hypogaea HOM05D005788 ORTHO05D007111 3.5e-109 398.7 246 76.0
Peaxi162Scf00268g00087 Petunia axillaris HOM05D005788 ORTHO05D007111 3.5e-109 398.7 246 75.6
TPR.G15721 Trifolium pratense HOM05D005788 ORTHO05D007111 3.5e-109 398.7 246 75.6
Ah.05g178250 Amaranthus hybridus HOM05D005788 ORTHO05D007111 4.6e-109 398.3 248 75.4
Cc00_g23910 Coffea canephora HOM05D005788 ORTHO05D007111 4.6e-109 398.3 250 74.4
Medtr1g096880 Medicago truncatula HOM05D005788 ORTHO05D007111 1.0e-108 397.1 246 74.8
Nitab4.5_0001082g0120 Nicotiana tabacum HOM05D005788 ORTHO05D007111 1.0e-108 397.1 246 76.4
Atru.chr13.1732 Acer truncatum HOM05D005788 ORTHO05D007111 1.3e-108 396.7 244 75.4
Ca_10625_v3 Cicer arietinum L. HOM05D005788 ORTHO05D007111 1.3e-108 396.7 246 74.0
MELO3C019942.2 Cucumis melo HOM05D005788 ORTHO05D007111 1.3e-108 396.7 243 74.5
DCAR_011531 Daucus carota HOM05D005788 ORTHO05D007111 1.3e-108 396.7 246 75.2
Migut.C01280 Erythranthe guttata HOM05D005788 ORTHO05D007111 1.3e-108 396.7 250 74.0
Lsat_1_v5_gn_4_135220 Lactuca sativa HOM05D005788 ORTHO05D007111 1.3e-108 396.7 246 75.2
PSO782G4240 Papaver somniferum HOM05D005788 ORTHO05D007111 1.3e-108 396.7 246 74.8
Rhsim09G0039300 Rhododendron simsii HOM05D005788 ORTHO05D007111 1.3e-108 396.7 248 74.2
CsaV3_6G004710 Cucumis sativus L. HOM05D005788 ORTHO05D007111 2.3e-108 396.0 243 74.1
MD15G1411300 Malus domestica HOM05D005788 ORTHO05D007111 3.9e-108 395.2 245 76.3
RcHm_v2.0_Chr7g0226481 Rosa chinensis HOM05D005788 ORTHO05D007111 3.9e-108 395.2 249 74.3
Oeu021219.1 Olea europaea HOM05D005788 ORTHO05D007111 5.1e-108 394.8 245 74.7
FvH4_5g31230 Fragaria vesca HOM05D005788 ORTHO05D007111 6.6e-108 394.4 246 76.0
FAN18G3373 Fragaria x ananassa HOM05D005788 ORTHO05D007111 6.6e-108 394.4 246 76.0
AUR62004634 Chenopodium quinoa HOM05D005788 ORTHO05D007111 1.5e-107 393.3 243 74.9
Aqoxy6G00159 Aquilegia oxysepala HOM05D005788 ORTHO05D007111 1.9e-107 392.9 246 75.6
AUR62022702 Chenopodium quinoa HOM05D005788 ORTHO05D007111 1.9e-107 392.9 243 74.9
MSTRG.1537 Avicennia marina HOM05D005788 ORTHO05D007111 3.3e-107 392.1 250 73.6
PSO170G1049 Papaver somniferum HOM05D005788 ORTHO05D007111 4.3e-107 391.7 246 74.0
FAN08G3056 Fragaria x ananassa HOM05D005788 ORTHO05D007111 7.3e-107 391.0 246 75.2
MBI16_g07687_MAGBIO Magnolia biondii HOM05D005788 ORTHO05D007111 1.6e-106 389.8 248 73.4
FAN13G1254 Fragaria x ananassa HOM05D005788 ORTHO05D007111 2.1e-106 389.4 246 74.4
Hma1.2p1_0162F.1_g072170 Hydrangea macrophylla HOM05D005788 ORTHO05D007111 2.4e-105 386.0 239 75.7
HPP92_005689 Vanilla planifolia HOM05D005788 ORTHO05D007111 2.4e-105 386.0 248 73.8
Psat0s617g0080 Pisum sativum HOM05D005788 ORTHO05D007111 5.8e-104 381.3 266 68.0
SGA_v2.0_scaffold25G11063 Striga asiatica HOM05D005788 ORTHO05D007111 9.9e-104 380.6 248 71.8
A07p38160 Brassica napus HOM05D005788 ORTHO05D007111 1.3e-103 380.2 244 70.9
SGA_v2.0_scaffold149G36576 Striga asiatica HOM05D005788 ORTHO05D007111 1.3e-103 380.2 250 71.6
C06p46090 Brassica napus HOM05D005788 ORTHO05D007111 2.2e-103 379.4 244 70.5
BcaC08g46643 Brassica carinata HOM05D005788 ORTHO05D007111 2.9e-103 379.0 244 70.5
DCAR_001074 Daucus carota HOM05D005788 ORTHO05D007111 3.8e-103 378.6 246 72.8
AT1G71990 Arabidopsis thaliana HOM05D005788 ORTHO05D007111 6.4e-103 377.9 244 70.9
CARHR064810 Cardamine hirsuta HOM05D005788 ORTHO05D007111 6.4e-103 377.9 246 70.3
Thhalv10018642m.g Eutrema salsugineum HOM05D005788 ORTHO05D007111 6.4e-103 377.9 246 69.9
THA.LOC104809738 Tarenaya hassleriana HOM05D005788 ORTHO05D007111 6.4e-103 377.9 267 68.5
BolC6t39662H Brassica oleracea HOM05D005788 ORTHO05D007111 1.1e-102 377.1 244 69.7
AL2G31600 Arabidopsis lyrata HOM05D005788 ORTHO05D007111 4.2e-102 375.2 244 70.5
BraA07t31381Z Brassica rapa HOM05D005788 ORTHO05D007111 4.2e-102 375.2 244 69.7
Sp5g27060 Schrenkiella parvula HOM05D005788 ORTHO05D007111 7.1e-102 374.4 246 69.5
Carub.0002s1877 Capsella rubella HOM05D005788 ORTHO05D007111 2.7e-101 372.5 244 69.7
Aa31LG4G8620 Aethionema arabicum HOM05D005788 ORTHO05D007111 1.3e-100 370.2 244 68.9
unitig_899.g14614 Utricularia gibba HOM05D005788 ORTHO05D007111 1.7e-100 369.8 244 70.1
CDE06G2084 Ceratophyllum demersum HOM05D005788 ORTHO05D007111 1.9e-99 366.3 248 69.8
ATR0584G227 Amborella trichopoda HOM05D005788 ORTHO05D007111 2.5e-99 365.9 245 69.4
DCAR_001073 Daucus carota HOM05D005788 ORTHO05D007111 1.4e-97 360.1 236 73.3
Glyma.02G073200 Glycine max HOM05D005788 ORTHO05D007111 1.2e-96 357.1 243 67.1
Glyma.16G154600 Glycine max HOM05D005788 ORTHO05D007111 3.4e-96 355.5 273 63.0
CDE08G0118 Ceratophyllum demersum HOM05D005788 ORTHO05D007111 4.5e-96 355.1 245 68.2
SHI09024 Sapria himalayana HOM05D005788 ORTHO05D007111 1.4e-94 350.1 243 65.4
BcaB03g14921 Brassica carinata HOM05D005788 ORTHO05D007111 1.6e-93 346.7 245 66.5
Os12g0170600 Oryza sativa ssp. japonica HOM05D005788 ORTHO05D007111 1.6e-93 346.7 248 64.9
Zm00001eb407990 Zea mays HOM05D005788 ORTHO05D007111 6.0e-93 344.7 248 64.1
SEGI_18807 Sequoiadendron giganteum HOM05D005788 ORTHO05D007111 1.3e-92 343.6 246 65.4
BcaC08g46644 Brassica carinata HOM05D005788 ORTHO05D007111 2.4e-89 332.8 241 65.1
Pp3c18_90 Physcomitrium patens HOM05D005788 ORTHO05D007111 9.6e-83 310.8 244 59.0
Os04g0432300 Oryza sativa ssp. japonica HOM05D005788 ORTHO05D007111 2.8e-82 309.3 246 58.5
Mapoly0001s0410 Marchantia polymorpha HOM05D005788 ORTHO05D007111 4.5e-80 302.0 246 59.3
SMO137G0293 Selaginella moellendorffii HOM05D005788 ORTHO05D007111 5.8e-80 301.6 238 60.9
Dinv41719 Davidia involucrata HOM05D005788 ORTHO05D007111 4.9e-79 298.5 233 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1873 Anthoceros agrestis HOM05D005788 ORTHO05D007111 1.8e-73 280.0 233 58.8
AagrBONN_evm.TU.Sc2ySwM_228.354 Anthoceros agrestis HOM05D005788 ORTHO05D007111 1.9e-70 270.0 245 54.3
Thhalv10027318m.g Eutrema salsugineum HOM05D005788 ORTHO05D007111 8.2e-66 254.6 214 58.9
Hma1.2p1_2688F.1_g326980 Hydrangea macrophylla HOM05D005788 ORTHO05D007111 3.1e-65 252.7 234 58.5
Nn5g27655 Nelumbo nucifera HOM05D005788 ORTHO05D007111 1.2e-61 240.7 158 74.1
HPP92_005698 Vanilla planifolia HOM05D005788 ORTHO05D007111 1.4e-54 217.2 149 69.8
CBR_g41226 Chara braunii HOM05D005788 ORTHO05D007111 7.4e-51 204.9 218 47.2
Psat3g206080 Pisum sativum HOM05D005788 ORTHO05D007111 3.6e-45 186.0 107 81.3
Psat6g172400 Pisum sativum HOM05D005788 ORTHO05D007111 2.0e-32 143.7 101 70.3
MD10G1093700 Malus domestica HOM05D005788 ORTHO05D007111 2.0e-19 100.5 53 86.8
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.5e-14 83.6 80 56.2
Cre18.g749697 Chlamydomonas reinhardtii HOM05D003465 ORTHO05D004034 9.2e-09 65.1 205 27.3
MCO02G019 Micromonas commoda HOM05D005788 ORTHO05D007111 2.1e-08 63.9 155 29.7
HanXRQChr16g0497621 Helianthus annuus HOM05D003465 ORTHO05D004034 1.0e-07 61.6 93 34.4
Peaxi162Scf00003g02335 Petunia axillaris HOM05D003465 ORTHO05D004034 3.0e-07 60.1 154 29.2
Aqoxy6G01316 Aquilegia oxysepala HOM05D003465 ORTHO05D004034 3.9e-07 59.7 93 34.4
CAN.G1707.1 Capsicum annuum HOM05D003465 ORTHO05D004034 6.6e-07 58.9 144 28.5
Nitab4.5_0002543g0080 Nicotiana tabacum HOM05D003465 ORTHO05D004034 8.6e-07 58.5 144 28.5
BcaC05g28503 Brassica carinata HOM05D003465 ORTHO05D004034 1.9e-06 57.4 115 29.6
C05p45870 Brassica napus HOM05D003465 ORTHO05D004034 1.9e-06 57.4 115 29.6
Nitab4.5_0003080g0100 Nicotiana tabacum HOM05D003465 ORTHO05D004034 1.9e-06 57.4 93 31.2
Nitab4.5_0003503g0030 Nicotiana tabacum HOM05D003465 ORTHO05D004034 1.9e-06 57.4 93 31.2
Nitab4.5_0007480g0040 Nicotiana tabacum HOM05D003465 ORTHO05D004034 1.9e-06 57.4 144 28.5
AagrBONN_evm.TU.Sc2ySwM_228.1554 Anthoceros agrestis HOM05D003465 ORTHO05D004034 2.5e-06 57.0 156 28.8
Peaxi162Scf00016g01955 Petunia axillaris HOM05D003465 ORTHO05D004034 3.3e-06 56.6 115 28.7
Cc02_g18830 Coffea canephora HOM05D003465 ORTHO05D004034 4.3e-06 56.2 146 27.4
Migut.B00352 Erythranthe guttata HOM05D003465 ORTHO05D004034 5.6e-06 55.8 93 31.2
Mapoly0164s0009 Marchantia polymorpha HOM05D003465 ORTHO05D004034 5.6e-06 55.8 161 25.5
CAN.G1041.31 Capsicum annuum HOM05D003465 ORTHO05D004034 7.3e-06 55.5 146 26.7
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 7.3e-06 55.5 93 33.3
A05p30320 Brassica napus HOM05D003465 ORTHO05D004034 9.5e-06 55.1 115 28.7


User provided reference genes

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