Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02570 Eucalyptus grandis HOM05D002035 ORTHO05D002032 9.3e-89 330.1 157 100.0
Manes.11G050600 Manihot esculenta HOM05D002035 ORTHO05D002032 2.8e-29 132.5 154 46.8
Actinidia08824 Actinidia chinensis HOM05D002035 ORTHO05D002032 1.2e-27 127.1 152 44.7
Migut.I00835 Erythranthe guttata HOM05D002035 ORTHO05D002032 1.6e-27 126.7 121 46.3
Ciclev10026432m.g Citrus clementina HOM05D002035 ORTHO05D002032 3.5e-27 125.6 151 41.7
CiPaw.01G241400 Carya illinoinensis HOM05D002035 ORTHO05D002032 8.5e-26 120.9 147 38.8
TWI12G0998 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 1.1e-25 120.6 165 35.8
Lj3g0011923 Lotus japonicus HOM05D002035 ORTHO05D002032 3.2e-25 119.0 154 42.9
Potri.001G176800 Populus trichocarpa HOM05D002035 ORTHO05D002032 3.2e-25 119.0 119 47.1
PSO063G6019 Papaver somniferum HOM05D002035 ORTHO05D002032 4.2e-25 118.6 147 41.5
Lj9A505T67 Lonicera japonica HOM05D002035 ORTHO05D002032 5.5e-25 118.2 117 49.6
Gorai.009G131700 Gossypium raimondii HOM05D002035 ORTHO05D002032 1.2e-24 117.1 152 40.1
Peaxi162Scf00015g00535 Petunia axillaris HOM05D002035 ORTHO05D002032 1.2e-24 117.1 128 40.6
Gohir.D05G127600 Gossypium hirsutum HOM05D002035 ORTHO05D002032 2.7e-24 115.9 150 40.0
Atru.chr1.3215 Acer truncatum HOM05D002035 ORTHO05D002032 3.6e-24 115.5 148 39.9
Dinv36594 Davidia involucrata HOM05D002035 ORTHO05D002032 6.1e-24 114.8 119 41.2
Glyma.08G208200 Glycine max HOM05D002035 ORTHO05D002032 8.0e-24 114.4 148 39.9
Aqoxy7G01891 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 1.4e-23 113.6 119 42.9
PGR102G2476 Punica granatum HOM05D002035 ORTHO05D002032 1.4e-23 113.6 161 39.1
Gohir.A05G126700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.8e-23 113.2 116 44.8
QL05p025724 Quercus lobata HOM05D002035 ORTHO05D002032 6.8e-23 111.3 121 43.0
Sopen03g038780 Solanum pennellii HOM05D002035 ORTHO05D002032 1.2e-22 110.5 118 41.5
CSS0016789 Camellia sinensis var. sinensis HOM05D002035 ORTHO05D002032 1.5e-22 110.2 118 47.5
Phvul.010G152100 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 1.5e-22 110.2 149 38.9
DCAR_011278 Daucus carota HOM05D002035 ORTHO05D002032 2.0e-22 109.8 149 38.3
Thecc.06G081100 Theobroma cacao HOM05D002035 ORTHO05D002032 2.6e-22 109.4 149 40.9
Atru.chr1.3213 Acer truncatum HOM05D002035 ORTHO05D002032 3.4e-22 109.0 131 44.3
Solyc03g119900.4 Solanum lycopersicum HOM05D002035 ORTHO05D002032 3.4e-22 109.0 117 39.3
Nn2g11853 Nelumbo nucifera HOM05D002035 ORTHO05D002032 4.4e-22 108.6 152 37.5
CAN.G438.100 Capsicum annuum HOM05D002035 ORTHO05D002032 1.7e-21 106.7 121 41.3
Manes.04G120300 Manihot esculenta HOM05D002035 ORTHO05D002032 1.7e-21 106.7 120 45.8
Psat7g253600 Pisum sativum HOM05D002035 ORTHO05D002032 1.7e-21 106.7 158 37.3
Gohir.A06G059700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 2.2e-21 106.3 146 34.2
Gorai.010G068000 Gossypium raimondii HOM05D002035 ORTHO05D002032 3.7e-21 105.5 146 34.2
Potri.003G057700 Populus trichocarpa HOM05D002035 ORTHO05D002032 3.7e-21 105.5 120 43.3
Gohir.D06G057900 Gossypium hirsutum HOM05D002035 ORTHO05D002032 6.3e-21 104.8 146 35.6
DCAR_021322 Daucus carota HOM05D002035 ORTHO05D002032 8.3e-21 104.4 158 36.1
Prupe.3G075500 Prunus persica HOM05D002035 ORTHO05D002032 8.3e-21 104.4 149 42.3
Cc03_g04200 Coffea canephora HOM05D002035 ORTHO05D002032 1.8e-20 103.2 122 39.3
ClCG09G002410 Citrullus lanatus HOM05D002035 ORTHO05D002032 2.4e-20 102.8 159 35.8
VMungo0331G0720 Vigna mungo HOM05D002035 ORTHO05D002032 2.4e-20 102.8 117 39.3
COL.COLO4_34949 Corchorus olitorius HOM05D002035 ORTHO05D002032 3.1e-20 102.4 121 38.0
Sed0022414 Sechium edule HOM05D002035 ORTHO05D002032 4.1e-20 102.1 159 38.4
Duzib192G0363 Durio zibethinus HOM05D002035 ORTHO05D002032 5.4e-20 101.7 129 38.8
Thecc.09G117000 Theobroma cacao HOM05D002035 ORTHO05D002032 7.0e-20 101.3 129 41.1
PSO782G4178 Papaver somniferum HOM05D002035 ORTHO05D002032 1.6e-19 100.1 144 36.1
ECA234G2382 Erigeron canadensis HOM05D002035 ORTHO05D002032 2.0e-19 99.8 120 40.0
Ah.06g192210 Amaranthus hybridus HOM05D002035 ORTHO05D002032 2.7e-19 99.4 123 37.4
Aqoxy2G03450 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 3.5e-19 99.0 132 34.1
Aqoxy5G00414 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 1.7e-18 96.7 159 37.7
TPR.G27503 Trifolium pratense HOM05D002035 ORTHO05D002032 2.3e-18 96.3 121 37.2
CANSAT54G0589 Cannabis sativa HOM05D002035 ORTHO05D002032 5.0e-18 95.1 126 38.9
CiPaw.08G124900 Carya illinoinensis HOM05D002035 ORTHO05D002032 6.5e-18 94.7 156 35.3
PSO782G0531 Papaver somniferum HOM05D002035 ORTHO05D002032 1.1e-17 94.0 134 38.8
RcHm_v2.0_Chr3g0451451 Rosa chinensis HOM05D002035 ORTHO05D002032 1.9e-17 93.2 124 37.1
Dinv04802 Davidia involucrata HOM05D002035 ORTHO05D002032 2.5e-17 92.8 127 34.6
PSO566G0113 Papaver somniferum HOM05D002035 ORTHO05D002032 3.3e-17 92.4 136 37.5
Atru.chr1.3214 Acer truncatum HOM05D002035 ORTHO05D002032 4.2e-17 92.0 115 36.5
FAN05G0128 Fragaria x ananassa HOM05D002035 ORTHO05D002032 4.2e-17 92.0 123 37.4
Nitab4.5_0000085g0010 Nicotiana tabacum HOM05D002035 ORTHO05D002032 4.2e-17 92.0 121 35.5
Lj7A639T57 Lonicera japonica HOM05D002035 ORTHO05D002032 5.5e-17 91.7 163 33.1
unitig_899.g14874 Utricularia gibba HOM05D002035 ORTHO05D002032 5.5e-17 91.7 125 36.0
CAN.G1402.15 Capsicum annuum HOM05D002035 ORTHO05D002032 1.6e-16 90.1 122 35.2
FvH4_6g03180 Fragaria vesca HOM05D002035 ORTHO05D002032 1.6e-16 90.1 123 36.6
MD04G1222300 Malus domestica HOM05D002035 ORTHO05D002032 1.6e-16 90.1 121 36.4
CiPaw.07G065300 Carya illinoinensis HOM05D002035 ORTHO05D002032 2.8e-16 89.4 119 36.1
Nitab4.5_0001046g0030 Nicotiana tabacum HOM05D002035 ORTHO05D002032 2.8e-16 89.4 121 34.7
GSVIVG01021829001 Vitis vinifera HOM05D002035 ORTHO05D002032 3.6e-16 89.0 152 31.6
FAN09G0076 Fragaria x ananassa HOM05D002035 ORTHO05D002032 4.7e-16 88.6 150 34.0
CsaV3_2G004250 Cucumis sativus L. HOM05D002035 ORTHO05D002032 6.1e-16 88.2 123 36.6
FAN14G0185 Fragaria x ananassa HOM05D002035 ORTHO05D002032 6.1e-16 88.2 150 34.0
COL.COLO4_30316 Corchorus olitorius HOM05D002035 ORTHO05D002032 8.0e-16 87.8 118 34.7
Manes.09G154100 Manihot esculenta HOM05D002035 ORTHO05D002032 1.0e-15 87.4 152 34.9
FAN02G0768 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.4e-15 87.0 124 35.5
Lj5g0013179 Lotus japonicus HOM05D002035 ORTHO05D002032 1.8e-15 86.7 150 30.7
Oeu064254.1 Olea europaea HOM05D002035 ORTHO05D002032 1.8e-15 86.7 151 35.1
FAN14G5962 Fragaria x ananassa HOM05D002035 ORTHO05D002032 2.3e-15 86.3 127 34.6
Lj6g0008601 Lotus japonicus HOM05D002035 ORTHO05D002032 2.3e-15 86.3 161 31.1
Dinv44571 Davidia involucrata HOM05D002035 ORTHO05D002032 4.0e-15 85.5 123 35.0
Gohir.A08G240401 Gossypium hirsutum HOM05D002035 ORTHO05D002032 4.0e-15 85.5 119 35.3
Medtr1g041410 Medicago truncatula HOM05D002035 ORTHO05D002032 4.0e-15 85.5 123 35.0
Psat6g104040 Pisum sativum HOM05D002035 ORTHO05D002032 4.0e-15 85.5 151 31.8
THA.LOC104803053 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 4.0e-15 85.5 159 32.7
VMungo0720G2123 Vigna mungo HOM05D002035 ORTHO05D002032 5.2e-15 85.1 152 29.6
Sp7g12860 Schrenkiella parvula HOM05D002035 ORTHO05D002032 6.8e-15 84.7 155 35.5
FAN05G4355 Fragaria x ananassa HOM05D002035 ORTHO05D002032 8.9e-15 84.3 150 34.0
HanXRQChr04g0096381 Helianthus annuus HOM05D002035 ORTHO05D002032 8.9e-15 84.3 81 45.7
TPR.G25193 Trifolium pratense HOM05D002035 ORTHO05D002032 1.2e-14 84.0 153 33.3
Ca_10049_v3 Cicer arietinum L. HOM05D002035 ORTHO05D002032 1.5e-14 83.6 122 32.8
Duzib052G0517 Durio zibethinus HOM05D002035 ORTHO05D002032 1.5e-14 83.6 146 33.6
THA.LOC104827557 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 1.5e-14 83.6 123 35.8
FAN14G3418 Fragaria x ananassa HOM05D002035 ORTHO05D002032 2.0e-14 83.2 150 33.3
A08p11430 Brassica napus HOM05D002035 ORTHO05D002032 2.6e-14 82.8 125 36.0
FvH4_6g03170 Fragaria vesca HOM05D002035 ORTHO05D002032 3.4e-14 82.4 150 32.7
Dinv14038 Davidia involucrata HOM05D002035 ORTHO05D002032 4.4e-14 82.0 159 31.4
Zm00001eb047790 Zea mays HOM05D002035 ORTHO05D002032 4.4e-14 82.0 148 35.8
arahy.Tifrunner.gnm1.ann1.5Q4L3S Arachis hypogaea HOM05D002035 ORTHO05D002032 5.7e-14 81.6 154 29.9
AL7G41180 Arabidopsis lyrata HOM05D002035 ORTHO05D002032 7.5e-14 81.3 158 33.5
Duzib151G0288 Durio zibethinus HOM05D002035 ORTHO05D002032 7.5e-14 81.3 159 32.1
HanXRQChr04g0106661 Helianthus annuus HOM05D002035 ORTHO05D002032 7.5e-14 81.3 127 35.4
MD12G1238500 Malus domestica HOM05D002035 ORTHO05D002032 7.5e-14 81.3 124 34.7
COL.COLO4_21556 Corchorus olitorius HOM05D002035 ORTHO05D002032 9.8e-14 80.9 125 34.4
CARHR221240 Cardamine hirsuta HOM05D002035 ORTHO05D002032 1.7e-13 80.1 153 32.7
HanXRQChr02g0045141 Helianthus annuus HOM05D002035 ORTHO05D002032 1.7e-13 80.1 128 35.2
Sabra05G0045600 Salix brachista HOM05D002035 ORTHO05D002032 1.7e-13 80.1 131 33.6
Sabra03G0033200 Salix brachista HOM05D002035 ORTHO05D002032 2.2e-13 79.7 191 29.8
TWI73G0018 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 2.2e-13 79.7 151 29.8
Carub.0007s2740 Capsella rubella HOM05D002035 ORTHO05D002032 2.8e-13 79.3 160 33.8
BcaC07g37847 Brassica carinata HOM05D002035 ORTHO05D002032 4.9e-13 78.6 125 35.2
SEGI_24731 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.9e-13 78.6 130 32.3
SEGI_28156 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 4.9e-13 78.6 130 32.3
Duzib212G0666 Durio zibethinus HOM05D002035 ORTHO05D002032 1.1e-12 77.4 160 30.6
SalBow3G4166 Salvia bowleyana HOM05D002035 ORTHO05D002032 1.4e-12 77.0 127 32.3
AUR62004925 Chenopodium quinoa HOM05D002035 ORTHO05D002032 1.8e-12 76.6 152 31.6
MSTRG.4057 Avicennia marina HOM05D002035 ORTHO05D002032 2.4e-12 76.3 120 33.3
MBI11_g35356_MAGBIO Magnolia biondii HOM05D002035 ORTHO05D002032 2.4e-12 76.3 124 29.0
Atru.chr4.2379 Acer truncatum HOM05D002035 ORTHO05D002032 3.1e-12 75.9 126 32.5
Atru.chr4.2403 Acer truncatum HOM05D002035 ORTHO05D002032 3.1e-12 75.9 126 32.5
BcaC09g50153 Brassica carinata HOM05D002035 ORTHO05D002032 4.1e-12 75.5 132 34.1
C01p28580 Brassica napus HOM05D002035 ORTHO05D002032 4.1e-12 75.5 132 34.1
BolC1t02771H Brassica oleracea HOM05D002035 ORTHO05D002032 4.1e-12 75.5 132 34.1
AT4G14746 Arabidopsis thaliana HOM05D002035 ORTHO05D002032 5.4e-12 75.1 158 31.6
A01p22860 Brassica napus HOM05D002035 ORTHO05D002032 7.0e-12 74.7 154 31.2
BraA01t02200Z Brassica rapa HOM05D002035 ORTHO05D002032 7.0e-12 74.7 154 31.2
Eucgr.B00933 Eucalyptus grandis HOM05D002035 ORTHO05D002032 7.0e-12 74.7 149 32.2
MSTRG.24727 Avicennia marina HOM05D002035 ORTHO05D002032 1.6e-11 73.6 120 35.8
Thecc.04G237600 Theobroma cacao HOM05D002035 ORTHO05D002032 2.0e-11 73.2 157 29.3
Migut.N00207 Erythranthe guttata HOM05D002035 ORTHO05D002032 2.7e-11 72.8 130 36.2
Eucgr.B01027 Eucalyptus grandis HOM05D002035 ORTHO05D002032 3.5e-11 72.4 149 31.5
SEGI_32269 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 3.5e-11 72.4 139 31.7
SMO340G0215 Selaginella moellendorffii HOM05D002035 ORTHO05D002032 7.8e-11 71.2 119 31.9
CARHR221230 Cardamine hirsuta HOM05D002035 ORTHO05D002032 2.3e-10 69.7 153 32.0
Glyma.07G033900 Glycine max HOM05D002035 ORTHO05D002032 5.0e-10 68.6 68 39.7
SalBow2G1507 Salvia bowleyana HOM05D002035 ORTHO05D002032 1.5e-09 67.0 123 29.3
Lj5A64T49 Lonicera japonica HOM05D002035 ORTHO05D002032 1.9e-09 66.6 94 35.1
Gohir.D08G261001 Gossypium hirsutum HOM05D002035 ORTHO05D047795 9.5e-09 64.3 118 28.8
ClCG02G016520 Citrullus lanatus HOM05D002035 ORTHO05D002032 6.1e-08 61.6 60 45.0
FAN02G1724 Fragaria x ananassa HOM05D002035 ORTHO05D002032 2.3e-07 59.7 179 28.5
ATR0083G065 Amborella trichopoda HOM05D002035 ORTHO05D002032 3.0e-07 59.3 73 39.7
FvH4_6g30802 Fragaria vesca HOM05D002035 ORTHO05D002032 2.6e-06 56.2 67 40.3
FvH4_6g30801 Fragaria vesca HOM05D002035 ORTHO05D002032 5.8e-06 55.1 79 35.4


User provided reference genes

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