Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 4.3e-80 301.2 148 100.0
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 2.9e-76 288.5 148 92.6
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 8.5e-76 287.0 148 93.2
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 1.1e-75 286.6 148 93.2
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 2.5e-75 285.4 147 91.8
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 3.2e-75 285.0 148 92.6
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 3.2e-75 285.0 148 92.6
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 4.2e-75 284.6 148 91.2
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 5.5e-75 284.3 148 90.5
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 7.2e-75 283.9 148 90.5
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 9.4e-75 283.5 148 91.9
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 9.4e-75 283.5 148 90.5
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.2e-74 283.1 148 90.5
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 1.6e-74 282.7 148 90.5
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.1e-74 282.3 148 91.9
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 2.1e-74 282.3 148 91.9
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-74 282.3 148 90.5
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 6.1e-74 280.8 148 90.5
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 6.1e-74 280.8 148 88.5
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 7.9e-74 280.4 148 91.2
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 7.9e-74 280.4 148 91.2
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 7.9e-74 280.4 148 91.2
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 1.0e-73 280.0 148 90.5
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 1.0e-73 280.0 148 91.2
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 1.4e-73 279.6 148 91.2
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.4e-73 279.6 148 89.9
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 89.2
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 89.9
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 89.2
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 2.3e-73 278.9 148 89.9
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 2.3e-73 278.9 148 89.9
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 3.0e-73 278.5 146 90.4
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 3.0e-73 278.5 148 89.9
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 3.0e-73 278.5 148 90.5
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 91.2
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 90.5
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 91.2
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 89.2
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 8.8e-73 276.9 148 89.2
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 8.8e-73 276.9 148 89.2
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.5e-72 276.2 148 89.2
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.5e-72 276.2 146 89.0
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 2.0e-72 275.8 148 88.5
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 2.0e-72 275.8 148 89.2
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 2.0e-72 275.8 148 89.9
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 5.7e-72 274.2 148 89.9
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 9.7e-72 273.5 144 90.3
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 9.7e-72 273.5 148 89.2
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 9.7e-72 273.5 148 89.2
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.3e-71 273.1 146 89.0
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.3e-71 273.1 168 81.5
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 1.7e-71 272.7 146 89.0
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 1.7e-71 272.7 148 87.8
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 88.5
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 89.2
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 86.5
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 85.1
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 3.7e-71 271.6 144 88.2
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 88.5
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 4.8e-71 271.2 146 89.7
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.3e-71 270.8 148 87.8
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 8.2e-71 270.4 144 87.5
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 8.2e-71 270.4 144 87.5
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 8.2e-71 270.4 146 88.4
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 1.1e-70 270.0 148 86.5
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 1.4e-70 269.6 148 85.8
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 1.4e-70 269.6 148 85.8
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.8e-70 269.2 148 87.2
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.8e-70 269.2 148 87.8
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 2.4e-70 268.9 147 86.4
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 4.1e-70 268.1 148 86.5
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 87.2
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 87.2
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 3.4e-69 265.0 148 86.5
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 5.9e-69 264.2 148 85.1
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 5.9e-69 264.2 148 83.1
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 5.9e-69 264.2 147 85.0
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 7.7e-69 263.8 148 86.5
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 7.7e-69 263.8 148 83.8
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.3e-68 263.1 139 92.1
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 2.2e-68 262.3 146 84.9
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 2.2e-68 262.3 146 84.2
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 1.1e-67 260.0 146 83.6
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 1.2e-66 256.5 158 78.5
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.6e-66 256.1 148 83.1
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 1.8e-65 252.7 130 90.8
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.5e-64 249.6 148 77.7
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 2.6e-64 248.8 140 85.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 9.7e-64 246.9 131 87.8
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.8e-63 245.4 198 64.6
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.8e-63 245.4 144 79.9
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 1.1e-62 243.4 124 94.4
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 1.1e-62 243.4 124 94.4
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.8e-62 242.7 144 78.5
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 9.1e-62 240.4 135 83.0
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.1e-62 240.4 123 95.1
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 4.5e-61 238.0 127 87.4
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.0e-60 236.9 124 91.1
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.5e-59 233.0 124 89.5
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 1.9e-59 232.6 124 89.5
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.2e-59 231.9 124 90.3
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 3.6e-58 228.4 122 91.8
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 8.0e-58 227.3 143 75.5
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.4e-57 226.5 146 73.3
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 2.3e-57 225.7 130 85.4
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 4.0e-57 224.9 148 71.6
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 8.8e-57 223.8 130 81.5
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.3e-55 219.9 130 79.2
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 1.7e-55 219.5 124 81.5
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 5.9e-53 211.1 143 67.8
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 2.2e-52 209.1 148 68.9
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 8.5e-52 207.2 121 79.3
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 4.7e-50 201.4 148 64.9
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 4.0e-49 198.4 118 80.5
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 5.7e-48 194.5 143 60.8
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 7.7e-45 184.1 113 78.8
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.1e-42 176.0 148 62.8
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 2.3e-41 172.6 148 62.8
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.0e-41 172.2 148 62.2
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 4.0e-41 171.8 119 72.3
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.8e-39 165.6 119 68.9
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 1.1e-38 163.7 143 55.2
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 1.6e-34 149.8 82 90.2
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.7e-34 148.3 84 81.0
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 9.8e-32 140.6 89 76.4
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 9.5e-27 124.0 155 49.7
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.2e-26 121.3 86 68.6
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.7e-23 112.1 65 87.7
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 2.4e-22 109.4 58 91.4
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 2.7e-21 105.9 60 86.7
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-20 103.6 85 61.2
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-20 103.6 128 50.0
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.7e-20 103.2 63 77.8
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 5.2e-17 91.7 152 35.5
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.2e-16 90.5 50 84.0
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.5e-16 90.1 138 35.5
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 5.8e-16 88.2 46 87.0
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 5.4e-14 81.6 141 34.0
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 1.1e-09 67.4 64 57.8


User provided reference genes

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