Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 8.9e-139 496.9 245 100.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.1e-79 298.1 240 61.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 7.9e-79 297.7 244 61.1
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.3e-76 290.4 240 59.2
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.8e-76 288.5 164 86.0
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.8e-76 288.5 240 61.7
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 4.8e-76 288.5 240 59.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 6.3e-76 288.1 211 64.9
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.4e-75 287.0 205 63.9
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.8e-75 286.6 242 59.1
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.0e-74 283.1 241 61.0
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.0e-74 283.1 214 63.6
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 5.9e-74 281.6 209 63.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.0e-73 280.8 244 59.0
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.3e-73 280.4 241 60.6
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 3.8e-73 278.9 244 60.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 6.5e-73 278.1 189 72.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 6.5e-73 278.1 244 60.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.5e-72 276.2 241 57.7
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 9.4e-72 274.2 207 63.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-71 273.9 241 55.6
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 8.0e-71 271.2 240 57.5
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 8.0e-71 271.2 205 62.9
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.0e-70 270.8 237 57.0
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.3e-70 269.6 237 57.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.3e-70 269.6 240 57.9
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 5.2e-70 268.5 244 55.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.8e-70 267.7 221 58.4
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.2e-69 267.3 239 55.6
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.2e-69 267.3 238 57.1
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.0e-69 266.5 240 57.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 4.4e-69 265.4 223 59.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 9.7e-69 264.2 189 65.6
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.3e-68 263.8 243 57.2
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.7e-68 263.5 205 60.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.7e-68 263.5 240 54.2
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.7e-68 262.3 246 57.7
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 6.3e-68 261.5 232 58.2
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 8.2e-68 261.2 246 53.3
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 8.2e-68 261.2 180 67.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.1e-67 260.8 242 52.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.8e-67 260.0 243 56.8
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 4.1e-67 258.8 242 52.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 5.3e-67 258.5 249 53.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 5.3e-67 258.5 184 68.5
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.3e-67 258.5 205 61.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 7.0e-67 258.1 242 55.4
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 7.0e-67 258.1 233 53.6
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-66 256.9 242 53.7
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.0e-66 256.5 241 53.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.0e-66 256.5 243 57.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 2.7e-66 256.1 238 55.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.7e-66 256.1 177 66.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.5e-66 255.8 241 53.1
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.5e-66 255.8 244 54.1
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.5e-66 255.8 205 60.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 3.5e-66 255.8 248 53.2
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.9e-66 255.0 179 68.2
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.9e-66 255.0 179 68.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.0e-65 254.2 248 53.6
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.3e-65 253.8 242 53.3
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-65 252.7 207 59.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.9e-65 252.7 205 59.5
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.9e-65 252.7 244 53.7
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.0e-65 251.9 203 58.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 5.0e-65 251.9 207 60.9
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 8.5e-65 251.1 240 55.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 8.5e-65 251.1 183 65.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.1e-64 250.8 178 68.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.5e-64 250.4 199 62.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.5e-64 250.4 236 52.5
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.5e-64 250.4 236 52.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.5e-64 250.4 247 53.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.2e-64 249.2 240 54.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.2e-64 249.2 182 67.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.2e-64 249.2 182 67.0
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 3.2e-64 249.2 182 67.0
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 4.2e-64 248.8 209 57.4
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.5e-64 248.4 199 61.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 9.4e-64 247.7 179 67.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.4e-64 247.7 235 53.6
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.2e-63 247.3 270 49.6
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-63 247.3 247 53.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.6e-63 246.9 167 69.5
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-63 246.5 236 54.2
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.1e-63 246.5 248 52.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.7e-63 246.1 203 59.1
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.4e-62 243.8 243 52.7
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.4e-62 243.8 239 54.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 3.0e-62 242.7 178 69.1
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 4.0e-62 242.3 182 64.8
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 4.4e-61 238.8 242 52.9
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.4e-61 238.8 180 61.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 5.7e-61 238.4 271 48.0
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.3e-60 237.3 156 70.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-60 236.9 205 56.6
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.2e-60 236.5 178 64.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.8e-59 233.4 180 60.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.4e-59 233.0 175 62.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.1e-59 232.6 147 74.1
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.2e-58 230.7 243 49.0
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.2e-58 230.7 202 55.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.5e-58 228.8 145 73.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.5e-58 228.8 146 74.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 4.5e-58 228.8 144 74.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 7.7e-58 228.0 147 71.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.0e-57 227.6 204 57.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.9e-57 226.1 145 73.1
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.9e-57 226.1 142 73.9
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.8e-57 225.7 147 70.1
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.0e-57 225.3 154 69.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-56 223.4 143 74.1
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 9.5e-56 221.1 134 76.1
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 9.5e-56 221.1 196 57.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.8e-55 219.5 163 65.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 4.0e-54 215.7 147 67.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.2e-53 214.2 179 55.9
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.4e-53 212.2 179 54.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.4e-53 212.2 179 54.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.8e-53 211.1 204 51.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.2e-52 209.9 188 55.3
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.0e-50 203.4 166 62.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.8e-50 201.4 201 50.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.1e-48 197.6 183 52.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 7.3e-48 194.9 122 70.5
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 9.8e-45 184.5 183 50.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.2e-44 183.3 242 43.0
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.2e-44 183.3 165 53.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 3.7e-44 182.6 240 45.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 8.3e-44 181.4 162 58.0
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.9e-42 175.3 140 56.4
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.0e-41 174.5 171 50.3
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.3e-41 174.1 140 55.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.3e-41 173.3 138 59.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.5e-40 170.6 141 53.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.5e-40 169.9 139 54.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 2.2e-36 156.8 172 48.3
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.9e-36 156.4 172 48.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.2e-35 152.9 206 42.2
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.2e-34 151.0 145 55.9
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 7.3e-32 141.7 145 53.1
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 9.2e-27 124.8 119 53.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-25 120.9 152 47.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.6e-25 118.2 178 41.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 8.4e-20 101.7 79 57.0
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.7e-17 94.0 140 35.7
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.3e-17 93.6 148 35.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-15 87.0 130 36.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-14 83.6 114 40.4
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 2.7e-10 70.1 59 59.3
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.7e-09 67.4 152 28.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.9e-09 66.2 118 30.5
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.9e-09 66.2 83 44.6
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.5e-08 63.5 114 28.9
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.3e-08 62.8 159 27.7
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.6e-08 61.6 81 39.5
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.0e-06 56.2 81 43.2


User provided reference genes

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