Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 4474.8 2330 100.0
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2767.3 2346 65.0
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2741.1 2322 64.0
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2732.2 2188 66.5
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2721.4 2164 67.1
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2718.3 2098 67.9
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2711.0 2360 62.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2707.9 2185 66.1
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2706.0 2208 64.8
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2697.2 2169 65.9
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2694.8 2346 62.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2691.8 2175 65.8
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2689.4 2243 64.6
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2689.1 2158 66.0
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2688.7 2252 64.5
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2687.1 2254 63.9
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2682.9 2191 65.7
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2677.9 2187 64.7
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2644.8 2202 63.8
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2642.5 2190 64.2
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2635.5 1890 72.1
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2623.2 2142 64.8
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2605.9 2129 64.9
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2559.6 2409 59.5
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2548.5 2210 62.4
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2546.5 2240 61.6
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2541.1 2152 63.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2533.4 2167 62.3
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2518.4 2164 62.1
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2507.2 2174 62.1
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2493.4 2184 61.9
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2485.3 2333 58.3
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2482.6 2058 64.3
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2472.2 2039 64.3
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2451.8 2188 60.5
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2434.1 2485 55.9
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2426.4 2202 60.3
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2416.3 2251 58.8
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2415.6 2042 62.9
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2415.2 2211 59.5
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2408.6 2201 59.1
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2399.8 2144 60.3
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2397.9 2034 62.3
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2392.8 2345 56.7
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2392.5 2175 60.0
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2391.3 2072 61.6
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2390.1 2048 62.7
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2384.4 2061 62.1
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2384.4 2061 62.1
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2384.0 2279 57.6
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2382.1 2237 58.5
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2381.3 2212 58.9
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2380.9 2214 58.9
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2379.0 2217 58.9
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2378.2 2260 58.0
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2377.1 2208 58.4
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2370.1 2255 57.8
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2369.3 1635 73.7
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2361.3 2256 57.8
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2355.1 2037 61.2
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2340.5 2260 56.9
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2323.1 2158 59.3
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2315.0 2351 55.2
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2308.9 2357 55.5
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2302.3 2282 56.3
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2281.5 1955 62.0
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2276.1 2157 57.7
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2228.8 1453 77.6
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2166.7 1904 60.3
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2135.1 2176 55.2
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 2134.4 3082 44.1
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2129.4 2258 53.8
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2094.3 2350 52.1
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1951.0 2205 51.2
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1933.3 2081 51.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1788.5 1703 57.7
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1756.9 1772 55.9
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1727.6 2044 49.0
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1723.8 1126 78.6
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1697.2 1775 53.5
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1669.4 1753 52.9
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1553.1 2021 45.4
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1479.2 2075 43.1
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1376.7 1349 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1317.0 2068 39.5
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1273.8 918 71.0
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1266.5 2037 39.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1215.3 2077 38.2
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1214.1 1567 45.4
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1194.5 2135 37.9
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1158.3 1404 49.1
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1152.9 1030 60.4
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 4.6e-309 1065.8 849 65.5
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.2e-293 1014.6 1029 54.4
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 3.5e-293 1013.1 830 63.0
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 6.3e-250 869.4 1347 41.8
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 3.7e-242 843.6 990 47.7
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 3.0e-228 797.3 892 49.7
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 3.7e-210 737.3 766 52.3
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 3.2e-209 734.2 726 56.1
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 5.4e-209 733.4 762 52.5
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 2.3e-204 718.0 578 65.7
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 1.9e-201 708.4 883 46.3
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.1e-196 691.0 442 81.9
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 4.9e-186 657.1 480 71.9
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 4.3e-174 617.5 386 81.1
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 5.3e-172 610.5 431 74.0
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.1e-161 576.2 375 77.9
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.4e-140 506.1 406 64.3
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 8.5e-122 443.7 288 78.1
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 2.0e-118 432.6 811 37.1
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 3.7e-109 401.7 362 63.8
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.1e-108 400.2 264 77.7
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.4e-103 383.3 891 32.5
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.9e-93 349.0 293 62.8
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 2.9e-93 349.0 567 39.0
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 8.6e-90 337.4 287 64.8
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 9.5e-89 334.0 1541 26.6
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.5e-81 310.1 1773 23.9
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 6.4e-77 294.7 314 55.4
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.2e-70 273.9 419 45.3
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 2.5e-65 256.1 160 81.9
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.5e-65 256.1 602 34.1
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.3e-64 253.8 438 39.5
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.9e-58 232.3 152 78.3
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-55 224.2 148 75.7
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 7.6e-54 218.0 125 90.4
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-53 216.9 180 70.0
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-53 216.9 180 70.0
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-53 216.9 180 70.0
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 2.9e-53 216.1 194 66.0
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 3.5e-51 209.1 155 71.6
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.8e-48 198.7 119 85.7
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 2.3e-42 179.9 129 76.7
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 1.4e-39 170.6 382 33.2
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 2.5e-33 149.8 1023 21.0
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 9.7e-33 147.9 285 35.4
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 2.6e-30 139.8 147 52.4
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.4e-30 139.4 231 39.0
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 1.1e-28 134.4 249 39.4
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-28 134.4 116 69.0
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-24 120.2 69 89.9
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.6e-22 113.2 145 44.8
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 2.5e-20 106.7 153 43.8
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 3.6e-19 102.8 75 68.0
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 2.3e-18 100.1 85 63.5
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 3.0e-18 99.8 600 25.3
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 4.4e-17 95.9 53 86.8
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.7e-16 94.0 54 77.8
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 4.8e-16 92.4 70 71.4
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 6.3e-16 92.0 72 66.7
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.4e-15 90.9 61 65.6
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 3.1e-15 89.7 55 76.4
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.1e-15 89.7 99 57.6
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 3.1e-15 89.7 56 76.8
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.3e-15 89.0 53 79.2
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.1e-15 88.2 62 69.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.2e-14 87.8 70 68.6
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.2e-14 87.8 54 66.7
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 5.9e-14 85.5 54 81.5
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 3.8e-13 82.8 73 61.6
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 6.5e-13 82.0 57 73.7
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.9e-12 80.5 99 53.5
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 2.5e-12 80.1 75 56.0
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 3.6e-11 76.3 51 74.5
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 5.2e-10 72.4 115 39.1
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.2e-09 71.2 50 74.0
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.5e-09 70.9 42 83.3
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 2.0e-09 70.5 49 79.6
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 3.3e-09 69.7 64 54.7
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 4.4e-09 69.3 430 25.3
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 7.5e-09 68.6 63 60.3
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 7.5e-09 68.6 48 70.8
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.2e-08 67.0 59 55.9
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 3.7e-08 66.2 42 73.8
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 4.8e-08 65.9 110 37.3
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-07 64.7 39 79.5
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 4.1e-07 62.8 45 68.9
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 1.6e-06 60.8 41 73.2


User provided reference genes

Program Settings