Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 3.1e-190 668.3 340 100.0
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 3.4e-104 382.5 224 85.7
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 4.4e-104 382.1 212 88.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.7e-103 380.2 278 73.0
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.2e-103 379.8 215 86.5
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 2.2e-103 379.8 225 84.9
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 3.2e-102 375.9 220 84.5
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 5.4e-102 375.2 222 86.0
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 5.4e-102 375.2 220 84.5
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 1.6e-101 373.6 284 70.4
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.7e-101 372.9 283 70.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 4.6e-101 372.1 220 86.8
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.6e-101 372.1 220 82.7
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 4.6e-101 372.1 220 82.7
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 4.6e-101 372.1 312 66.3
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 6.0e-101 371.7 216 85.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 6.0e-101 371.7 220 82.3
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 6.0e-101 371.7 220 83.6
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 1.0e-100 370.9 225 83.1
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.7e-100 370.2 223 84.3
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 2.3e-100 369.8 285 68.8
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.0e-100 369.4 235 80.9
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 3.9e-100 369.0 221 85.1
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 5.1e-100 368.6 297 68.0
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 8.7e-100 367.9 222 82.9
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.5e-99 366.3 224 81.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 7.3e-99 364.8 290 69.0
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.3e-98 364.0 285 69.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.1e-98 363.2 268 71.6
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 8.1e-98 361.3 224 80.8
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.8e-97 360.1 227 79.7
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.8e-97 360.1 222 80.2
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.4e-97 359.8 262 71.8
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 3.1e-97 359.4 224 81.2
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.0e-97 359.0 281 68.3
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 5.3e-97 358.6 281 68.3
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.5e-96 357.1 220 81.8
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 2.0e-96 356.7 220 82.3
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 2.6e-96 356.3 240 77.5
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 9.9e-96 354.4 223 78.5
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 9.9e-96 354.4 267 69.7
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.3e-95 354.0 281 67.3
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.2e-95 353.2 270 70.0
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 6.4e-95 351.7 249 75.5
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 8.4e-95 351.3 222 78.4
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 8.4e-95 351.3 280 66.8
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 8.4e-95 351.3 261 71.3
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 8.4e-95 351.3 222 79.3
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 8.4e-95 351.3 288 68.8
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 1.1e-94 350.9 219 81.7
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.1e-94 350.9 217 81.1
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.4e-94 350.5 218 80.7
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.4e-94 350.5 292 66.8
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 1.9e-94 350.1 284 68.3
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 3.2e-94 349.4 219 81.3
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 5.4e-94 348.6 220 81.4
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 2.1e-93 346.7 232 76.3
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 2.1e-93 346.7 226 77.9
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.1e-93 346.7 217 79.7
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 3.5e-93 345.9 226 77.4
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 4.6e-93 345.5 226 77.4
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 4.6e-93 345.5 226 77.4
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 4.6e-93 345.5 226 77.4
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 4.6e-93 345.5 232 75.9
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 4.6e-93 345.5 222 77.9
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 7.9e-93 344.7 266 68.0
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.0e-92 344.4 274 67.5
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.8e-92 343.6 232 75.4
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.3e-92 343.2 222 78.4
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 2.3e-92 343.2 322 60.6
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 2.3e-92 343.2 274 65.3
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 3.9e-92 342.4 280 66.4
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 5.1e-92 342.0 278 66.5
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.5e-91 340.5 224 77.2
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.9e-91 340.1 278 66.2
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 7.4e-91 338.2 223 76.7
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 7.4e-91 338.2 223 76.7
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 9.6e-91 337.8 273 66.3
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 2.8e-90 336.3 206 82.0
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 3.1e-89 332.8 201 83.6
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 7.6e-88 328.2 321 58.6
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.1e-86 324.3 332 57.5
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.5e-86 323.2 182 84.6
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 5.5e-86 322.0 182 84.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.6e-85 320.5 249 67.9
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.5e-83 313.9 213 73.7
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 7.4e-83 311.6 173 87.9
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 7.4e-83 311.6 213 72.8
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 2.1e-82 310.1 170 88.8
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 4.1e-81 305.8 317 55.5
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.5e-80 303.9 185 82.7
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.9e-79 299.7 240 67.9
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 8.4e-79 298.1 283 59.4
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.4e-78 297.4 232 67.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.2e-78 296.2 196 76.5
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.3e-76 290.8 256 59.8
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 1.9e-75 287.0 234 67.1
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 5.7e-75 285.4 226 67.7
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 4.8e-74 282.3 221 67.4
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 1.4e-73 280.8 258 60.9
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 5.3e-73 278.9 188 73.4
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.0e-72 276.9 157 86.6
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 3.2e-70 269.6 217 65.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 2.3e-68 263.5 192 64.6
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 7.9e-61 238.4 203 66.5
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 3.3e-59 233.0 221 58.4
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.5e-54 217.6 121 85.1
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 6.7e-52 208.8 110 90.9
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.3e-47 194.5 231 52.4
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 2.2e-47 193.7 191 61.3
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 8.5e-47 191.8 219 48.4
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 4.4e-43 179.5 302 39.1
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 2.2e-42 177.2 203 48.8
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.8e-42 176.0 121 75.2
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 2.9e-39 166.8 97 82.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 1.9e-38 164.1 97 81.4
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 1.4e-36 157.9 285 40.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 7.5e-35 152.1 180 53.9
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 2.0e-32 144.1 187 48.1
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 2.0e-32 144.1 80 85.0
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.5e-32 143.3 86 80.2
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.8e-29 133.7 78 84.6
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.0e-28 130.2 78 80.8
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 5.8e-19 99.4 79 68.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.9e-18 96.3 140 49.3
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 1.4e-17 94.7 70 67.1
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 3.2e-17 93.6 52 86.5
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.7e-15 87.8 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 2.3e-15 87.4 51 80.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 2.8e-13 80.5 48 77.1
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 4.7e-13 79.7 83 51.8
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.0e-11 74.3 47 70.2
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 2.1e-08 64.3 47 66.0
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 6.6e-07 59.3 58 62.1
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 5.6e-06 56.2 39 71.8


User provided reference genes

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