Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 7.7e-178 627.1 329 100.0
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.1e-83 314.3 317 61.2
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.6e-82 310.5 312 59.9
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.7e-82 309.7 319 60.5
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.8e-81 307.0 322 59.9
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.9e-80 303.5 316 60.4
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 8.2e-79 298.1 321 58.6
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 5.5e-75 285.4 330 57.9
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 7.2e-75 285.0 329 55.6
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 7.2e-75 285.0 329 55.6
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.2e-74 284.3 248 67.7
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.7e-74 283.1 302 60.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.8e-73 280.4 240 68.3
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.3e-73 280.0 299 58.5
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 5.1e-73 278.9 310 58.4
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.1e-73 278.9 301 57.8
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.5e-72 276.6 329 55.0
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.3e-72 276.2 318 56.3
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.3e-72 275.8 318 55.3
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.3e-71 274.2 326 55.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.3e-71 274.2 322 57.1
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.3e-71 274.2 324 56.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.7e-71 273.9 325 55.1
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 2.8e-71 273.1 317 54.6
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 8.2e-71 271.6 320 55.6
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.4e-70 270.8 320 56.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-70 270.4 310 56.8
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.4e-70 270.0 329 55.9
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 3.1e-70 269.6 248 66.1
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 3.1e-70 269.6 300 59.3
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.1e-70 269.2 310 56.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 5.3e-70 268.9 344 54.7
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 1.7e-68 263.8 317 55.2
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.8e-68 262.7 329 55.3
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 5.0e-68 262.3 323 53.3
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.1e-67 261.2 322 56.8
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.1e-67 261.2 319 55.8
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.2e-67 259.6 317 55.2
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 7.2e-67 258.5 310 56.5
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 9.4e-67 258.1 318 56.3
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 9.4e-67 258.1 240 63.3
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.2e-66 257.7 244 63.5
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 6.1e-66 255.4 292 55.5
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 7.9e-66 255.0 301 55.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.8e-65 253.8 230 62.2
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.8e-65 253.8 221 65.6
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.0e-65 253.1 321 49.2
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.0e-65 253.1 320 53.1
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.9e-65 252.7 326 53.1
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 6.7e-65 251.9 315 52.4
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.1e-64 251.1 314 52.2
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.1e-64 251.1 327 53.5
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.6e-64 250.0 306 50.7
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.6e-64 250.0 318 53.5
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.3e-64 249.6 298 54.4
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 3.3e-64 249.6 261 59.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.7e-64 248.8 324 52.2
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 9.7e-64 248.1 216 65.3
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.3e-63 247.7 327 52.9
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.3e-63 247.7 327 52.9
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.3e-63 247.7 320 52.2
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.8e-63 246.5 324 51.9
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.7e-63 246.1 313 54.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.4e-62 244.2 322 54.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.2e-61 241.1 263 56.3
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.6e-61 240.0 296 55.4
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.4e-61 239.6 315 54.6
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.7e-61 238.4 313 52.1
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.7e-60 237.3 270 58.1
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 5.0e-60 235.7 278 56.1
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-59 234.6 307 52.1
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.1e-59 234.6 309 51.1
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.2e-59 233.0 324 52.2
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 3.2e-59 233.0 312 51.6
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 4.2e-59 232.6 243 56.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.2e-59 232.6 313 52.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 7.2e-59 231.9 330 50.9
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 9.4e-59 231.5 319 50.5
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.4e-59 231.5 318 48.7
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.6e-58 230.7 298 51.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.1e-58 230.3 304 52.6
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 4.7e-58 229.2 303 50.5
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 6.1e-58 228.8 300 53.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.4e-57 227.6 255 57.3
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 3.9e-57 226.1 324 49.7
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 6.7e-57 225.3 357 48.7
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.8e-57 224.9 349 49.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.3e-56 223.0 336 46.4
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.4e-56 221.9 319 46.1
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 9.7e-56 221.5 295 52.5
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.8e-55 219.9 264 55.3
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 2.8e-55 219.9 320 45.9
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.3e-55 218.8 305 46.9
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.4e-54 216.9 251 56.2
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 3.1e-54 216.5 343 44.9
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 7.0e-54 215.3 314 49.4
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 7.7e-53 211.8 341 46.6
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.3e-52 211.1 152 76.3
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.9e-52 209.9 336 45.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.1e-51 208.0 241 56.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.7e-50 202.6 304 47.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 8.0e-50 201.8 244 52.0
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.3e-49 200.3 249 53.0
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 8.8e-49 198.4 327 47.4
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.6e-48 196.8 248 55.2
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 9.7e-48 194.9 309 47.2
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-47 194.1 245 52.7
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.7e-47 194.1 250 52.0
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.7e-47 194.1 321 43.9
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 2.2e-47 193.7 306 47.4
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 2.8e-47 193.4 248 52.0
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.8e-47 193.4 290 47.6
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 8.2e-47 191.8 247 51.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 8.2e-47 191.8 250 51.6
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.8e-46 190.7 305 46.9
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.1e-46 189.9 318 45.6
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 4.1e-46 189.5 244 52.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.1e-46 189.5 254 50.4
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 7.0e-46 188.7 261 51.3
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 7.0e-46 188.7 261 51.3
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 2.0e-45 187.2 304 45.4
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 5.9e-45 185.7 253 52.6
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 7.7e-45 185.3 315 44.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.3e-44 184.5 307 45.0
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.7e-44 184.1 322 43.8
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.2e-44 183.7 253 51.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.5e-43 180.3 246 47.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 9.4e-43 178.3 268 48.1
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 9.4e-43 178.3 316 45.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-42 177.2 268 47.4
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 2.1e-42 177.2 268 47.4
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.1e-42 177.2 237 48.9
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 2.3e-41 173.7 269 48.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 5.2e-41 172.6 315 44.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 5.7e-40 169.1 227 53.3
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 7.5e-40 168.7 284 44.7
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.8e-39 166.8 311 43.1
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.8e-39 166.8 305 42.0
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 9.1e-38 161.8 276 46.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.5e-37 159.5 207 51.7
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.5e-37 159.5 296 40.2
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 7.7e-37 158.7 298 40.6
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 7.7e-37 158.7 166 55.4
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.0e-36 158.3 343 40.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 3.6e-34 149.8 255 43.9
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 4.7e-34 149.4 304 41.4
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 9.8e-32 141.7 99 74.7
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.7e-31 139.8 206 46.1
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.7e-31 139.8 245 44.1
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 6.3e-31 139.0 307 40.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 9.2e-30 135.2 102 71.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 8.6e-28 128.6 298 37.2
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.5e-27 127.9 298 37.2
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-26 124.4 304 36.8
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.6e-26 124.4 304 37.5
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.8e-26 123.6 246 41.9
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.0e-25 121.7 125 56.8
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.6e-21 107.8 166 48.8
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 6.6e-20 102.4 254 36.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.5e-19 100.5 302 33.1
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 7.0e-14 82.4 61 67.2
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.6e-13 81.3 64 75.0
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 1.9e-06 57.8 226 29.2


User provided reference genes

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