Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.7e-169 598.6 309 100.0
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.6e-106 388.3 338 64.2
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 7.4e-106 387.9 338 63.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.6e-105 386.7 323 66.3
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.3e-104 381.7 338 63.6
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.0e-102 377.5 334 62.3
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.9e-102 375.9 329 64.4
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.8e-102 375.6 332 63.6
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 8.4e-102 374.4 307 68.4
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.9e-101 373.2 334 64.1
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 4.2e-101 372.1 329 64.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 9.3e-101 370.9 241 79.3
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.6e-100 370.2 311 65.9
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 3.5e-100 369.0 313 64.9
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 7.9e-100 367.9 221 86.4
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.0e-99 367.5 329 62.9
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.3e-99 367.1 313 64.9
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.8e-99 366.7 314 65.3
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.3e-99 366.3 228 82.5
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.9e-99 365.5 311 65.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 6.7e-99 364.8 312 66.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-98 364.0 312 66.7
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.5e-98 363.6 298 67.4
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.5e-98 363.6 318 64.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.6e-98 360.9 328 61.3
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.8e-97 359.4 243 76.5
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.7e-97 359.0 314 64.6
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.1e-96 355.9 244 74.6
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.1e-96 355.5 230 80.0
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 9.0e-96 354.4 211 86.3
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.2e-95 354.0 244 73.4
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.4e-95 352.4 260 72.3
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-95 352.1 316 64.2
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-95 352.1 316 64.2
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.5e-95 352.1 228 79.8
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.6e-95 351.3 231 78.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.0e-94 350.9 240 75.8
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.0e-94 350.9 337 59.3
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.3e-94 350.5 239 76.6
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.3e-94 350.5 235 77.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.7e-94 350.1 329 61.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.2e-94 349.7 332 63.0
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 5.0e-94 348.6 222 81.5
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.5e-94 348.2 224 80.4
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.4e-93 347.1 239 76.2
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.4e-93 347.1 310 60.6
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.5e-93 346.3 224 79.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 2.5e-93 346.3 246 73.2
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.5e-93 346.3 309 60.2
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 3.2e-93 345.9 250 73.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 3.2e-93 345.9 230 78.3
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.2e-93 345.9 316 61.4
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.2e-93 345.5 328 59.5
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 9.3e-93 344.4 321 61.4
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.3e-93 344.4 328 59.5
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 9.3e-93 344.4 310 60.3
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.6e-92 343.6 322 59.9
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.6e-92 343.6 234 77.8
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.6e-92 343.6 310 60.3
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.7e-92 342.8 228 77.6
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.7e-92 342.8 323 60.4
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 4.6e-92 342.0 310 61.6
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 4.6e-92 342.0 231 77.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 7.9e-92 341.3 221 79.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.9e-92 341.3 341 59.8
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 7.9e-92 341.3 230 76.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 7.9e-92 341.3 227 77.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.0e-91 340.9 224 78.1
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.0e-91 340.9 227 77.5
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.8e-91 340.1 239 75.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.3e-91 339.7 225 77.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.0e-91 339.3 316 60.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 6.7e-91 338.2 230 75.2
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.7e-91 338.2 241 72.6
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 8.7e-91 337.8 225 76.4
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.1e-90 337.4 310 61.0
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.5e-90 337.0 234 74.4
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.9e-90 336.7 221 78.3
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 3.3e-90 335.9 234 74.8
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 4.3e-90 335.5 225 76.9
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 5.7e-90 335.1 225 76.9
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 5.7e-90 335.1 225 76.9
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 5.7e-90 335.1 310 60.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 5.7e-90 335.1 225 77.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 7.4e-90 334.7 231 75.8
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 9.7e-90 334.3 238 73.1
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.3e-89 334.0 234 73.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-89 334.0 229 76.4
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 3.7e-89 332.4 228 77.2
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.7e-89 332.4 325 59.7
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 4.8e-89 332.0 220 77.3
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.8e-89 332.0 229 74.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 6.3e-89 331.6 226 76.5
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 6.3e-89 331.6 233 75.1
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 8.2e-89 331.3 243 71.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.1e-88 330.9 320 60.0
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.1e-88 330.9 240 72.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.4e-88 330.5 226 77.0
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 3.1e-88 329.3 319 59.6
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 3.1e-88 329.3 317 59.6
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 3.1e-88 329.3 319 59.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.1e-88 329.3 233 74.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 4.1e-88 328.9 226 76.5
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 4.1e-88 328.9 211 80.6
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 6.9e-88 328.2 236 72.0
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 6.5e-86 321.6 222 75.2
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.1e-85 320.9 292 62.7
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.2e-85 319.3 231 72.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 7.2e-85 318.2 232 71.6
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.6e-84 317.0 278 61.9
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.1e-84 316.6 234 69.7
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 6.1e-84 315.1 221 73.8
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.9e-83 312.4 315 56.8
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.1e-82 310.8 218 74.8
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.3e-81 307.4 223 72.6
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.1e-80 304.3 245 66.5
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.4e-80 303.9 219 71.7
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.1e-80 302.8 253 64.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.3e-80 302.0 337 53.7
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.5e-79 300.4 225 69.8
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.5e-78 295.0 220 70.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.1e-76 290.0 271 61.3
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 4.7e-76 288.9 314 55.4
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.8e-73 279.6 271 60.5
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.6e-71 273.9 177 78.0
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.5e-71 272.7 177 81.4
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.0e-70 271.2 169 82.2
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 5.5e-69 265.4 233 62.7
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.6e-66 256.5 166 79.5
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.7e-65 253.8 198 69.2
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-65 253.8 190 71.1
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 2.4e-64 250.0 254 59.1
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.2e-63 247.7 321 48.3
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.5e-61 238.8 204 65.2
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.0e-59 232.6 157 80.9
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.2e-58 231.1 185 65.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.0e-58 230.3 226 56.6
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.0e-58 230.3 226 56.6
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.4e-58 229.2 190 66.8
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.0e-56 221.9 173 68.8
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.5e-55 219.5 176 65.3
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.5e-53 214.2 160 72.5
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 6.1e-52 208.8 198 57.6
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 8.0e-52 208.4 185 60.0
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.3e-51 206.8 346 41.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.1e-48 198.0 185 56.2
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.7e-41 174.1 153 59.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.3e-33 147.9 340 35.0
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 8.9e-27 125.2 241 33.2
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 8.3e-25 118.6 68 82.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.2e-20 104.8 209 34.9
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.6e-18 97.1 214 33.2
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.4e-16 91.3 235 30.6
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.1e-13 81.6 219 32.0
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 4.0e-11 73.2 41 78.0
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 5.2e-11 72.8 56 66.1
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.4e-10 70.1 57 68.4
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.9e-09 67.0 41 75.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.9e-08 64.3 69 52.2
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.4e-08 62.8 59 55.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 7.8e-07 58.9 178 29.8


User provided reference genes

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