Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 8.3e-191 670.2 347 100.0
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 7.5e-91 338.2 349 56.7
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 8.9e-84 314.7 346 56.1
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.4e-83 312.8 341 56.3
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-82 310.8 346 55.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 2.9e-82 309.7 352 52.8
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.5e-80 302.8 337 52.2
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 4.6e-80 302.4 341 54.0
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 6.0e-80 302.0 337 50.4
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.8e-80 301.6 359 51.8
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 7.8e-80 301.6 339 53.7
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 2.3e-79 300.1 354 52.8
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 3.0e-79 299.7 371 52.3
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.1e-79 298.9 360 51.4
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 8.6e-79 298.1 385 47.8
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 8.6e-79 298.1 358 53.1
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.5e-78 296.6 339 52.5
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.5e-78 296.6 362 50.6
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 3.3e-78 296.2 346 50.9
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.3e-78 295.0 362 50.0
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 9.5e-78 294.7 360 48.1
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 4.7e-77 292.4 343 53.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-76 291.2 359 51.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.1e-76 291.2 337 49.9
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 4.0e-76 289.3 347 50.4
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 5.2e-76 288.9 356 50.3
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 8.9e-76 288.1 349 47.3
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 8.9e-76 288.1 358 50.0
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 4.4e-75 285.8 351 50.4
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.9e-74 283.1 364 50.8
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 3.7e-74 282.7 372 49.7
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.4e-74 282.0 342 50.3
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 6.4e-74 282.0 338 52.1
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.4e-73 280.8 348 52.0
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.9e-73 280.4 342 50.0
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.9e-73 280.4 338 52.7
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.4e-73 280.0 352 49.7
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 4.1e-73 279.3 356 46.1
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.1e-73 279.3 350 50.3
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 9.2e-73 278.1 339 51.6
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.2e-72 277.7 364 49.2
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 7.8e-72 275.0 357 49.6
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.5e-70 270.8 356 49.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.5e-70 270.8 341 47.2
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.2e-69 267.7 342 47.7
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 4.7e-69 265.8 352 47.7
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 8.9e-68 261.5 360 43.1
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.2e-67 261.2 342 49.4
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.4e-67 259.6 350 50.3
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.2e-66 256.9 356 46.6
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 2.2e-66 256.9 355 43.4
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 3.8e-66 256.1 361 45.4
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 6.4e-66 255.4 352 47.4
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 6.4e-66 255.4 282 53.5
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.4e-65 253.4 346 42.5
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 3.5e-64 249.6 359 47.4
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.3e-62 242.7 349 46.7
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 9.6e-62 241.5 337 42.7
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 9.0e-60 235.0 366 42.3
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.2e-59 234.6 341 43.7
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.6e-59 233.4 358 45.3
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 3.4e-59 233.0 343 45.5
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 4.4e-59 232.6 277 47.3
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 7.6e-59 231.9 348 41.4
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.3e-58 231.1 327 45.6
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 3.8e-58 229.6 362 42.3
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 4.9e-58 229.2 344 42.4
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.9e-57 227.3 333 43.2
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 3.2e-57 226.5 347 42.7
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.1e-56 223.8 308 45.5
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.1e-56 223.8 369 40.9
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 6.0e-56 222.2 342 43.0
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 6.0e-56 222.2 342 43.0
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 6.0e-56 222.2 342 43.0
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.0e-55 221.5 345 41.4
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.3e-55 221.1 349 41.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.7e-55 220.7 309 44.7
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 8.7e-55 218.4 339 41.0
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-54 216.9 342 42.1
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.5e-54 216.9 371 40.7
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 5.6e-54 215.7 341 42.8
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.6e-53 214.2 354 42.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.1e-53 213.8 340 43.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.6e-53 213.0 328 41.8
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.8e-52 210.7 290 44.8
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-51 207.6 344 41.0
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.4e-51 206.5 343 40.5
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 9.9e-51 204.9 248 46.8
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.4e-50 202.2 347 40.3
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 8.4e-50 201.8 340 45.3
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 8.4e-50 201.8 340 40.6
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.9e-49 200.7 351 40.2
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.6e-48 196.1 373 37.5
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 6.0e-48 195.7 343 39.7
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.3e-47 194.5 340 39.7
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.3e-47 193.7 350 38.9
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.5e-46 191.0 201 50.2
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 3.3e-46 189.9 329 40.7
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.3e-46 189.5 349 38.4
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 5.6e-46 189.1 348 37.6
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 7.4e-46 188.7 348 39.1
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 7.4e-46 188.7 348 39.7
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 9.6e-46 188.3 288 41.7
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 9.6e-46 188.3 357 39.2
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-45 187.6 341 38.4
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.6e-45 187.6 354 40.1
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.8e-45 186.8 344 38.7
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.8e-45 186.8 346 41.9
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-45 186.8 341 38.4
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.1e-44 184.9 349 39.3
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.1e-44 184.9 341 39.0
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.4e-44 184.5 343 38.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.8e-44 184.1 347 36.0
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 5.3e-44 182.6 343 40.2
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 6.9e-44 182.2 361 38.5
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.5e-43 181.0 236 45.8
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-43 181.0 341 37.5
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-43 180.6 344 39.5
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 4.5e-43 179.5 361 37.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.0e-42 178.3 359 36.2
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.3e-42 177.9 342 37.4
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-42 177.2 359 36.5
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 2.9e-42 176.8 359 36.2
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 6.5e-42 175.6 292 40.8
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 8.4e-42 175.3 353 37.4
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-41 174.5 341 40.5
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.4e-41 174.5 294 39.5
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-41 174.1 350 38.9
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.9e-41 174.1 342 37.1
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 2.5e-41 173.7 239 45.2
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.6e-40 171.0 359 36.8
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 2.1e-40 170.6 340 38.8
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 2.1e-40 170.6 340 38.8
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 2.1e-40 170.6 340 38.8
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.1e-40 170.6 341 37.2
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.8e-39 167.5 340 38.2
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.8e-39 167.5 330 37.9
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 5.1e-39 166.0 350 38.6
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 5.1e-39 166.0 350 38.6
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 5.1e-39 166.0 350 38.6
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 5.7e-38 162.5 364 32.7
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 3.7e-37 159.8 345 35.4
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 6.2e-37 159.1 337 36.2
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 5.3e-36 156.0 338 36.7
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.2e-35 154.8 357 36.7
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 3.4e-35 153.3 232 41.4
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.0e-34 151.8 344 34.6
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.2e-34 150.6 345 34.8
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.1e-32 144.1 353 32.9
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 3.5e-32 143.3 359 34.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 5.1e-31 139.4 278 32.7
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.5e-30 137.9 261 37.9
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 4.3e-30 136.3 335 32.8
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 5.7e-30 136.0 346 34.7
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 7.4e-30 135.6 337 32.6
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 8.2e-29 132.1 314 34.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 1.2e-27 128.3 361 34.1
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-27 127.9 337 31.5
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 1.5e-27 127.9 369 32.0
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 4.5e-27 126.3 425 29.6
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.3e-26 124.8 412 30.1
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.9e-25 120.9 325 32.6
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-21 107.8 169 40.2
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 4.7e-16 89.7 220 33.6
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.8e-15 87.8 72 55.6
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 3.9e-15 86.7 179 41.3
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 6.7e-15 85.9 340 30.3
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.1e-14 85.1 174 34.5
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 8.2e-13 79.0 345 27.2
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.9e-10 70.5 301 27.6
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-09 68.6 98 44.9
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.5e-09 68.2 107 40.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 4.2e-09 66.6 293 25.9
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 4.2e-09 66.6 397 23.7
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 7.2e-09 65.9 312 24.0
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 8.0e-08 62.4 314 25.2
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.0e-07 62.0 300 25.7
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 2.3e-07 60.8 314 23.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.3e-07 60.8 342 25.1
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.0e-07 60.1 294 25.9
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 5.2e-07 59.7 360 26.1
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.7e-07 59.3 399 23.8
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.7e-07 59.3 306 25.2
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 2.0e-06 57.8 317 25.6
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.6e-06 57.4 312 24.4
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.3e-06 57.0 383 24.5
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 7.5e-06 55.8 355 24.5


User provided reference genes

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