Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 9.8e-155 550.1 271 100.0
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 1.7e-98 363.2 228 78.5
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 6.5e-98 361.3 229 76.4
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 8.5e-98 360.9 229 76.9
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.4e-97 360.1 231 75.8
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.4e-97 360.1 231 75.8
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.5e-97 358.2 231 76.2
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 2.1e-96 356.3 228 77.2
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 4.6e-96 355.1 236 72.0
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 6.1e-96 354.8 228 75.4
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.4e-95 353.6 229 76.0
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 2.3e-95 352.8 230 75.7
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.0e-95 352.4 236 72.5
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 6.7e-95 351.3 232 73.7
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 8.8e-95 350.9 229 73.8
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.5e-94 350.1 235 73.2
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.5e-94 350.1 231 74.0
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 2.5e-94 349.4 230 75.2
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 4.3e-94 348.6 233 70.4
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 7.4e-94 347.8 232 73.7
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 9.7e-94 347.4 232 75.4
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 9.7e-94 347.4 236 72.5
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 1.3e-93 347.1 230 74.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.7e-93 346.7 232 75.0
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.7e-93 346.7 235 72.3
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 3.7e-93 345.5 229 73.8
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 6.3e-93 344.7 216 77.8
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 7.7e-91 337.8 235 71.9
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 7.7e-91 337.8 225 73.8
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 2.2e-90 336.3 231 71.0
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 2.9e-90 335.9 225 72.0
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 3.8e-90 335.5 220 72.3
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 6.5e-90 334.7 216 75.9
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 6.5e-90 334.7 230 71.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 8.5e-90 334.3 270 63.3
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 1.1e-89 334.0 230 72.6
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.4e-89 333.6 230 70.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 2.5e-89 332.8 230 70.0
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 5.5e-89 331.6 226 71.7
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 7.2e-89 331.3 231 71.0
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 2.1e-88 329.7 231 69.3
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 4.7e-88 328.6 231 69.3
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 6.1e-88 328.2 221 72.9
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.0e-87 327.4 231 70.1
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.3e-87 326.2 230 70.4
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 3.0e-87 325.9 231 71.0
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 3.9e-87 325.5 225 70.7
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 6.7e-87 324.7 231 68.8
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 8.8e-87 324.3 233 68.2
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 8.8e-87 324.3 233 67.8
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 8.8e-87 324.3 231 68.8
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.6e-86 322.8 233 66.5
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 4.4e-86 322.0 232 68.5
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 4.4e-86 322.0 225 70.2
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.7e-86 321.6 224 70.1
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 5.7e-86 321.6 231 68.0
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 9.7e-86 320.9 227 69.2
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.7e-85 320.1 233 67.8
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.7e-85 320.1 233 67.8
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.2e-85 319.7 233 67.8
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 3.7e-85 318.9 230 67.8
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 6.3e-85 318.2 233 67.4
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 6.3e-85 318.2 225 67.1
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 8.2e-85 317.8 227 68.7
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 8.2e-85 317.8 233 67.8
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.4e-84 317.0 219 71.7
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.4e-84 316.2 219 71.7
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 9.1e-84 314.3 229 67.2
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 9.1e-84 314.3 206 76.2
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.5e-83 313.5 204 77.0
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.5e-83 312.0 216 72.2
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.5e-83 312.0 231 66.7
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 4.5e-83 312.0 231 66.7
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 7.7e-83 311.2 233 66.1
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.7e-83 311.2 235 65.5
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.0e-82 310.8 229 66.8
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.0e-82 310.8 226 67.7
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.0e-82 310.8 228 65.8
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 2.2e-82 309.7 229 67.7
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 5.0e-82 308.5 228 65.8
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.1e-81 307.4 230 66.1
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.9e-81 306.6 233 65.2
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 5.5e-81 305.1 216 69.4
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 3.6e-80 302.4 232 65.5
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 6.1e-80 301.6 232 65.5
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.8e-79 300.1 216 68.5
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 2.3e-79 299.7 277 55.2
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.0e-79 299.3 228 65.8
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.9e-79 298.9 224 65.6
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 8.8e-79 297.7 240 62.5
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.1e-78 297.4 233 66.1
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 2.0e-78 296.6 223 65.0
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 5.7e-78 295.0 189 76.2
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.1e-76 289.3 313 52.4
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 7.0e-76 288.1 194 73.2
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.6e-75 287.0 269 55.0
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 5.9e-75 285.0 348 45.4
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.6e-72 275.8 246 58.5
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 1.2e-70 270.8 212 62.3
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 3.5e-67 259.2 224 54.9
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.5e-65 253.8 178 69.7
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.9e-65 253.4 227 54.2
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.2e-64 250.8 193 65.3
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.7e-64 249.6 190 65.8
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 3.6e-64 249.2 254 52.8
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 2.6e-62 243.0 176 68.8
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.8e-61 238.8 225 53.3
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 6.6e-58 228.4 221 54.3
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.5e-54 217.2 219 52.1
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 2.4e-52 209.9 228 47.8
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 7.0e-52 208.4 261 43.3
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.7e-51 206.5 142 73.9
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 2.9e-50 203.0 168 63.1
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 4.7e-48 195.7 140 66.4
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 6.1e-48 195.3 229 45.4
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 9.2e-44 181.4 238 43.7
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.5e-43 179.5 136 64.7
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 8.0e-40 168.3 133 64.7
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 4.4e-38 162.5 120 69.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 9.2e-36 154.8 203 44.3
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 3.1e-31 139.8 162 47.5
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 9.5e-25 118.2 79 65.8
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 3.0e-18 96.7 79 57.0
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 4.5e-06 56.2 110 32.7
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 4.5e-06 56.2 36 77.8


User provided reference genes

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